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13-1762-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185162 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -648; Region: promoter
    Flanking Genome Sequence: 13-1762-1 - 5-prime edge 
    GTCCCACCCG CTATGTAGGG ATACCCCATC TAGTCTTAAC GAGCTTTGAT 
    GCATGAAAAA ATTCGAAAAC AATGCTTGAA CAAGTAATTT TGGGTCCGTA 
    ATATAGCCCA AATTACGAAA ATGCCCGAAA AAGTACNTTA AAGGTCAAAA 
    TTTGGGGTCG ACAAAAAGTC AATGGAAAAG TTCCATTGTC CTGCTTATTT 
    CGTCGGAGGG CTGTCTTTGG GCTTTCCGAA AAGGTATCAC ATGCCAAGTT 
    TGGCCTCACG GTCTAAAAGT TATGGAGTCA TAAAGTTTTA ACCAAAAAAA 
    AANGGTTAAN CNTAAAAAAG GGATNCANCN CNAGGACTTC CCGGGNGGNC 
    NCCCATCCTA NTACTACTTT CNCCCAANCN CNCTTNACTG NGGAGTTNTN 
    ANGGNATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185278 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -764; Region: promoter
    2. Chromosome: 5; Position: 11185780 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1266; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4763; Region: intergenic
    3. Chromosome: 5; Position: 11186282 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1768; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4261; Region: intergenic
    Flanking Genome Sequence: 13-1762-1 - 3-prime edge 
    GGTGGGACCC ACGGCGAATG GTTCATCAAG TCTTCAAAAA AGAATATATA 
    GGATTGCATT GCATATACTA ACGGATGCGA TCATACCAGC ACTAATGCAC 
    TGGATC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR