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13-1796-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30187521 [Map]; Strand: w
      • AT1G80280.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -935; Region: promoter
      • AT1G80290.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -800; Region: promoter
      • AT1G80290.2 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -843; Region: promoter
    Flanking Genome Sequence: 13-1796-1 - 5-prime edge
    ATGATATAGG TGCTTTAGTT TTGTTGACCC TAGAGGCAAA CCAAATGCAT 
    GAAACACAAC ACACTTATAG ATATATATAT ATAGAGAGAG AGAGATTGCA
    TATATAAAAG GCAAACTACC AACTGAAAAA GAGCAAAGAT CACGTGCNTG
    GGTCCCAATT CCACTCTCTG CACTTTCACG GTTTGAGCAG CTCACATGGG
    ACCTTACCTG CTGCCGCATC TAAAGCTGCC CCGATGTACA AGCCCCTCTT
    CGATTCCCCA CCATTTACTC ACTTTCATGC ATCTCTCACT CCCTCTTTTA
    CCTATCTATG TTTTTATTTT AGATCTTTTT TTCCTTGGGG CAAANGGTTA
    TTAACTAGAT CTCAATATTC ATTCGTNTGT TTTTTGTCTC CGTTTCTATC
    TACAATGGAA TCCGAGGCAG AGGATTCTGT CATGACTTGT NGATATTGAA
    TATTTGTTTT GNGCTTGAAA TCTCAAANAT TAGTTTATTA ATTANACAGT
    GTACCTATGA CTTTGCTTAA AAAAAACGAC CAACTTGNTT CTGTGCTTTG
    NCATCCNAGT NAAANGACAC ACNTNGTTTT TGTCGGANAA GGGNCGTTGC
    GCTGGGCNGC CCTNTNACTA AACTAGACAC TNNGTNTNTA NTNGNNGCNN
    CTCNCCTATT CCCNCNNNGN GNGGGNAAAA AGNANNTNTT TTACNACATA
    AANCA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30187519 [Map]; Strand: w
      • AT1G80280.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -933; Region: promoter
      • AT1G80290.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -802; Region: promoter
      • AT1G80290.2 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -845; Region: promoter
    Flanking Genome Sequence: 13-1796-1 - 3-prime edge
    NNGGNNGNNN GNNNNNNNNN NNANNNNANN NNNTNNANNN GNGNNNAANN 
    CAANNNNNNN ATTAGCAAAC GGNNGNAGGT TTTTACCGAC CGNNACCGAG
    CGAGTNCATC CNTATATATC ATNNNCCCTT CTTCAATCAA CTAGCTAGGC
    ATGTGATTTG ATTATTAGAT CACACTGATC TTTGTGACTT GAATCAAGTG
    ACATTTTGGT CGGATAACAT AAAATTGGTT TCTAGTTACA ACAAGATAGT
    TTGGTGATAC NTTATTAAGT TGTTTTTGCA AATAATTAAC ATGTGAAAAG
    CGATAAAATT AATGGATGGC CCATATTGTT AATTTAAGAT ATAGACAGTG
    ATTGGGGAAA AGATGAGGAA TGTANGGACT GCTGTGTAAA TANAAATGGN
    CCCGACAAGA ATCTTCAAGA AAAAACCTCA CGAAATCCAA GTTTTGAAAG
    TTAACGGTCA CAAAATAATT AATNTAATNN ANNAGGAACA NAAACANCCT
    NTNNTNNTCC CGCTATCCNT TGGNTANTGN TACAGCACTC CTNTATNNGG
    GTATAANCCG NACATGNGCG NGNNGCTTCT TNANCTTGTA TNTCTTATGN
    TNCAAATNTA CNANATTNNT NGNATNTTNC TNNTTNTCNN NGGANAAANA
    TTGCNTNGTC NTACTAATAT GGTGCAATNN NCAANCCCGN GNCACNGAAN
    NCGTATNNAG TATTTNNANN NTGNGNTTTA CTNNTACNNT NNATTNNNNN
    NNNTNCCAAG NNATCNTNNN TNNCCNNTNG NTCTGAGNGN CNNCAATTNN
    TAGGGNCNNA NGTACNTAAA NTAGGNTNTN GGNATNGGNN TTNGNTCNNC
    ATNATTTATG NNNAATNTTN GAGGNGNTNT ATTGNTTTNC GGNACAN

AT1G80280.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1); Has 7676 Blast hits to 7658 proteins in 1204 species: Archae - 71; Bacteria - 5735; Metazoa - 276; Fungi - 71; Plants - 550; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80290.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80290.2

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 640 Blast hits to 640 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 8; Plants - 102; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR