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13-1813-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5598725 [Map]; Strand: c
      • AT1G16380.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-1813-1 - 5-prime edge 
    GNTAANGNAA NNCNANGGAC ANTGGGCANT NAGACANGTG AANGCAGTNT 
    CTCNNCAGAT AGNNAGACAA CGGGNNCGTG CGANTGNTGG ATCACNAGCC 
    AGGGGCGCGN CGACCATGCA GNNCCCTGAN AATTATAAGA GAGATCGGGG 
    AGATGTATTC ACTGTTTGTG GTAGGAAAAA ACAGAGGAGA TTGTCCAATG 
    ACTTCAGGAA TGAATGATTG GGAAGAGTGT CCGGAATTAG GAACGGTCGG 
    AGATTTCTTG GCTTCATCAA ATATGGATGT AAATGCTTCT GTATTAGTAG 
    TTCAAAGACA TAGAAACTCA TTTGATAGCT TTGTAGATGA ATAGCAAATA 
    CTCTTTAGTT TTTACTTGAC ACAACTTAAA ATAGTTTACT CCTTAAAATC 
    AAGACAAACA TCACATAATA GAAAACATAT GAAAATGGAG AATGTTNGAG 
    CTAAACAAAC TNNTNAANTC TCAGCAAACA TGGNTGGTNT TTACGGGCTT 
    GANCTNNTCT TTTATNGGNN TTNCATCNAN TNGCAGNAGA CTCANACCTT 
    NNGTCTTNGG NCNAAGTNAA GACCGAACTT TCCGTANACN CGGNACNTTG 
    GCNNNNNCNA NANNNNAAAA NAANAACNGN TGGGNTTGGT TTCGNCNNGT 
    CGTNNNGNTT AGGCGGNNAN NNNGTGTNGN NNNTNNGNNN GNNGNNGNNT 
    TAAANNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5595275 [Map]; Strand: w
      • AT1G16360.1 - [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
        Distance: -96; Region: promoter
    Flanking Genome Sequence: 13-1813-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    GAAACCCATT TTGTGTTGTT GGATTAATGT AACTCCCAAC AAATTAAAAT 
    GTGTGATACC TTTTGATTTC TCTCTTCTTA AGATAAGTTT CCTAGAATCT 
    AGGTCAACTA AGAAACATAA TTTGTTGGCT AACTTTGCTT CATCAGATTC 
    AAGATTTACC CAACAGGAGC TTCCAGCATG CAAACCAATT CTTACTCCAA 
    AATGGGTAAA GCT

AT1G16360.1

Model type
Protein coding
Short Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Computational Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 5 (TAIR:AT1G79450.1); Has 865 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16380.1

Model type
Protein coding
Short Description
Cation/hydrogen exchanger family protein
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
ATCHX1; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 2 (TAIR:AT1G79400.1); Has 3057 Blast hits to 3030 proteins in 956 species: Archae - 198; Bacteria - 2123; Metazoa - 0; Fungi - 129; Plants - 509; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR