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13-1828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13097102 [Map]; Strand: w
      • AT1G35530.2 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 24; Region: intergenic
      • AT1G35535.1 - [+] show detail - transposable element gene
        Distance: -1164; Region: intergenic
    Flanking Genome Sequence: 13-1828-1 - 5-prime edge 
    GATGGTATGG AGAAAGATGC ACCATCTTTT GATCTTGGTC TGTGGTGATT 
    CTTCTTTCAT ACGAAGATAC TAAGTTATGT ATATAGATTG ACAAAGGAGA 
    CAGTAGAGCA TAGGCATTTG GATGTATGTT TTGTGTATTA AGTTTATGTA 
    TATCCTATTG AAGTACAGTG CTTAAGGCAG TGCACATGGT TAAATCAAGG 
    TTAATGCCTC AATTCGTTGA ACCCTTTAAG TAATGACACA AATATGACTA 
    CATCGGCCAA CACTCTCACA CCTCTCAACC CTAAACTGAC ATTACAAAGC 
    AACATTTACC ATTGGCACGA AAAGAAAACT AAAATAAAAT AAAAAAATTA 
    GATGTACAAT AGACGCTATA AACTCTAGAA ATTAATAATA TTGGGATCAT 
    AAAATTTTAT TAATTTATAA TGATATTAAT ATAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13096986 [Map]; Strand: w
      • AT1G35530.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 0; Region: exon21 (CDS)
      • AT1G35530.2 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 0; Region: exon23 (CDS)
    Flanking Genome Sequence: 13-1828-1 - 3-prime edge 
    ATACCATCAC TTCTCTGCAT GCCTGGATTA GGTATAACCG TTGCGTCTTC 
    TTTCTCTTTT GCTTCGGATC TCTGTTTCGA CAATAACAAT GTGGCTTGTG 
    CTTCCATTGC ATCAAAGTCT AGTGTCGCAA AGAATGCATC ATCATCATCA 
    TCATTGTACT CTAACGCACC TGCATTGCTT CTCACGCCTT CATGGCTTTC 
    CTTCTCCGTG GCTTGTGCAT GAGCTGCAAA CTTGCTTTCT AAGTTAATCA 
    CGGGGGCATT CGCCGAGTTG CATAAGCTAA ATTTCCTTTT CCGGCTATCT 
    GATGAGATTT GTACTACCGA AAGGTTTCCT ATCATCATTG CATCTTGGTT 
    TGACTCAGAG TTTGTTGTTT TTGGTGTTCG AAGAGAAGAC AATGATTTAT 
    CTGAGTCGCT TCTGCTCTCA TTTATTCTCG TCAAGGGTCC AGCAGAATAA 
    GGACTCAGAC TTGATGCGGC TAAATCACGA AATCTCGCCG GTAATGGTGA 
    CTGGCTGAGA AGAGAACGCC TGTGGAAGGA TACCTTGTGA TTTTTAATAA 
    GCTCATTGAC CTCGCAGTAG AAGAAAGATA TCTTTGGTTG TATGTACCTG 
    TAAACAGCCA TCATGTCAAC TTTACCANAC TCNGGCTTGA GTATTTGCTG 
    AAGCATTGGT CCNNCATCTN TGAAACNATC TTNAAATGNA TCGCCNNNNN 
    NATCTTCNNN TCTAATAAGC CNANATNTCN GCNNCAA

AT1G35530.1

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1); Has 20447 Blast hits to 20241 proteins in 2853 species: Archae - 674; Bacteria - 11662; Metazoa - 2557; Fungi - 1790; Plants - 1282; Viruses - 18; Other Eukaryotes - 2464 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35530.2

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1).
Link
InterPro Scan - TAIR

AT1G35535.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.6e-252 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR