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13-1867-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 160591 [Map]; Strand: w
      • AT2G01330.1 - [+] show detail - nucleotide binding
        Distance: 0; Region: exon1 (CDS)
      • AT2G01330.2 - [+] show detail - nucleotide binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-1867-1 - 5-prime edge 
    CCAGAGACAT CAGCGGAAGC GATCCATTCG CCGTTGGGAG AGTAGCGAGC 
    AACGGTAACA GCATAGCCAT GTTCGCCGTA AACTTGGACG TCTTGGAGTT 
    GGCGGAGGCT CCGGATGAAG ACAGAGCNGG CCGTTGCAGT AGAGAATGGT 
    GTCGGATTTG GAATCGCCGG AGATCAAAAT GCCGCGGCCT CGTTCGGTGG 
    AGGGAACACA AGGAAAGGTC TCGAGGAGTT TCGCCATCGT GGAATTGTTG 
    GTAGGAAGAA TCGGTGAAGG AGTGCGTCAT TTCTTCTTCT TCTTCTTCTT 
    CTTCTTCAGA GGAGGAGGAG AAAGTTTAGG AGGAAATTAA GGGTTGGGGA 
    TTTTGAACGA TTCATCAAAC ATTTGCTAAT TTTGAGTCAG CTGATGTCNA 
    GAGACATTGT ACCGGCTTTT TCTGGTCTGG TTTGATGTTT TTTCGGTTAT 
    TAGTTAAATC ACAAATACTG AACCGGCAGT GGTTGGGTTG GGTTTGGTTG 
    GGCCATANCC CATAGCTAAA TCTCTTTCCT AGGTTCTTTG CTCTTTTCAN 
    CTACCAATTN TCTTCTNGCT TGTTAGGCCT GGCCAAATAA ACCAAACTGA 
    NTTNTNANAC CCCNACCNNA GTNAAATAAT NNNACTAATN GNACNGAAAA 
    NTNTAAANAN CTGANTGATN NTANNTCNTT NNTNGAAAAA CCNANNCN

AT2G01330.1

Model type
Protein coding
Short Description
nucleotide binding
Computational Description
nucleotide binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01330.2

Model type
Protein coding
Short Description
nucleotide binding
Computational Description
nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18060.1).
Link
InterPro Scan - TAIR