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13-1887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3728729 [Map]; Strand: c
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -563; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: -242; Region: promoter
    Flanking Genome Sequence: 13-1887-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT GGGTGGATTT AAGGAAACCA TTCAAAACCA 
    CAATGCCACC TAAAGCCATA AGATTTAAAA ATCTCTTACA ATCATTATAA 
    ATCTAATCCT TAAGTTTTCA AGGACATGAA AATTTTGAGT AGATTTTCAA 
    GCT

AT1G11145.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR