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13-1971-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5189410 [Map]; Strand: w
      • AT3G15360.1 - [+] show detail - thioredoxin M-type 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-1971-1 - 5-prime edge 
    GATACAGAAG CGTNCCAACA GTAATCATCT TCAAAGGCGG TGAGAANAAA 
    GATAGCATCA TTGGAGCTGN GCCTAGAGAG ACGTTGGAGA AAACTATAGA 
    AAGATTCTTG GTCGAGTAAC AAAATTTGAC TCTTTTGTCA CTCTGAACCA 
    TTTTACCTTA TCTTCTCTCT TGTAATCTCT GTAAAGTCTT TTAAGTTTTT 
    GACTATTATG TTATCGTGGG TCCTCTTTGT CTTCTTCAAT AAAAAAAATG 
    GAAACAAAGT AATCCACCGA CGCATGAGAA GCATAACTCC ACGTTGAACC 
    ACATGCCATT GTTCTTCCTA ATTCACCGTA CAATCTATAT ACATACATAT 
    GTTTTGAGTA ATGTAGGCCN CCNTACTGTT TCATTCTGTG TACTGCATAG 
    GACATATNTN AATACCACNA GGGGGTCTNT GTAANCTTAT ATNNTNTCAT 
    GTATGNTTNT CGANTCCTAA CGCCAGTTCT GCGAGNTATA TACTATGTGG 
    CNCTGNCCAA GCCATGTNTT TNACTNNACG ATCATGANAA AACTCNTTTN 
    NTTTTTAACA NATTNTTNGT NGGATCCCCC TNNTCNANNC TCCGNATNAA 
    ACNGGNNATT TTCGNGACCC AAAANNNGTG ATAACNTAGT ACCNAAAATN 
    CCNANCTNTT GNANAANNCG CCANNANTNN ATNANNNAAA NCT

AT3G15360.1

Model type
Protein coding
Short Description
thioredoxin M-type 4
Curator Summary
encodes a prokaryotic thioredoxin
Computational Description
thioredoxin M-type 4 (TRX-M4); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cell wall, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 22907 Blast hits to 21478 proteins in 3001 species: Archae - 325; Bacteria - 11943; Metazoa - 2959; Fungi - 1292; Plants - 2075; Viruses - 15; Other Eukaryotes - 4298 (source: NCBI BLink).
Link
InterPro Scan - TAIR