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13-1993-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3775841 [Map]; Strand: w
      • AT1G11250.1 - [+] show detail - syntaxin of plants 125
        Distance: 6135; Region: intergenic
      • AT1G11260.1 - [+] show detail - sugar transporter 1
        Distance: -1487; Region: intergenic
    Flanking Genome Sequence: 13-1993-1 - 3-prime edge 
    NTTTTAANAT ACTCTTTTTC TTTCTTCAGN CNTACTTGAT GTTCATTGGT 
    TTCCATCTAA TCTTTGGCTT TTTGCTTAAT AGGCAGAGTA AAGAGAAAGA 
    GGCAAAATTT GGTTGATAAA AAAAGGTAAA GGCGAATAAA GAAATTGTTT 
    TAAAATAAAG GGGTTAAAGG TAATTTTAAA AAGCTGTGCT TATTCTTTTC 
    CCAGATTCGC GGCACTTCTG AACTAAGATT TGCATATGAT TATCATTTAT 
    CATAACCCAA ACTTCCTAAA TTACCCCTGT ACACTTCCCC CTTTTGATAA 
    TTCACAACCA AATGGAACTT TCATAATTTC AAACTCACTG CGAAATTCCA 
    AAACAACATA ATTGTCTAAC TTCCTGAAAA ATCTGTGTAA AATGAAGTAT 
    AGTAATTGCT AGAGCAGTGA ATATAAAATC CAAGGACAAA GGGACGAATA 
    TGACATTTTT GGGTGGATTT TTAATTAATA AACGTCGTAG TGAAGGGTGA 
    TAAAGACAAG ATC

AT1G11250.1

Model type
Protein coding
Short Description
syntaxin of plants 125
Curator Summary
member of SYP12 Gene Family
Computational Description
syntaxin of plants 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 124 (TAIR:AT1G61290.1); Has 2564 Blast hits to 2556 proteins in 299 species: Archae - 11; Bacteria - 67; Metazoa - 1171; Fungi - 457; Plants - 455; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11260.1

Model type
Protein coding
Short Description
sugar transporter 1
Curator Summary
Encodes a H+/hexose cotransporter.
Computational Description
sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
Link
InterPro Scan - TAIR