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13-1998-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3987417 [Map]; Strand: w
      • AT1G11800.1 - [+] show detail - endonuclease/exonuclease/phosphatase family protein
        Distance: -127; Region: promoter
      • AT1G11806.1 - [+] show detail - pseudogene, hypothetical protein, likely a tandem duplication of the immediat...
        Distance: -929; Region: promoter
    Flanking Genome Sequence: 13-1998-1 - 5-prime edge 
    TCGTTTTGGA CAAAGAAGAT GGTTTACAAT TTCAATGTTT AAATTTGAAA 
    GGTGAACCGT AATCAAACCG AAACTAACCG AAGTATACCC ATATACCAGA 
    AGACAGAATT AGCNTGTTGG GGAATACAAC AAAAACAAAA ACATACTATT 
    TAGGAGACAA ATTTTATACA AAATTTTATT GTCAAGAGAC TAAAATCTAT 
    ACTAGCATTT TCGAAGTACA TCTCTTGGCA ATAAAATTTA GATGACTAGT 
    TTTAGTCTAT TGTCTTTCTT TTTCTAAGAT CGATCCTAAA TGTATTGACA 
    TGAACATGAT CATGTCTATT GCAAAAACCT GTCATTCTAT CTTCAAACTT 
    TAAGAAGAAG AGGGGGAAAA ACTCCTACGT TTAAAATGAG TAAGTCTATT 
    TTTCAACTCG GAAGAACAAA ATGTTGGATT TGCAGTGATG TAGGTATCTT 
    CAGGACAAGG AATCGCTAAG CCACCCATTG GATGATCAAA CCTTGACTCG 
    CTCTCGAAAT TACTAATGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3987353 [Map]; Strand: w
      • AT1G11800.1 - [+] show detail - endonuclease/exonuclease/phosphatase family protein
        Distance: -63; Region: promoter
      • AT1G11806.1 - [+] show detail - pseudogene, hypothetical protein, likely a tandem duplication of the immediat...
        Distance: -993; Region: promoter
    Flanking Genome Sequence: 13-1998-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGCAAAACGA TGTCGTATAA TAATAACACG TAGCCGTTAA ATGAAAACCG 
    AAGCGTCAAA AAATCAAAAT CGATAAAAAC TAATTAGGGT AAATGTCAAC 
    AACAATCCGA TTTCTGAGAA TTGTCACAAG TCGAGCAATG TCGTCGTCTT 
    GGTCCTGCAA CAAATGTACT TTCCTCAATT CTGCGTCTCA GAAACTCAAT 
    TGCATGATCT GCTTGGCTCC TGTATCTCTC CCTTCTTTGT CTCCTCCTCC 
    ACCTTCTCTC TCAATTTCCG CGAACGATGA AGCTAAATGG GCTTGCAAGG 
    CCTGTACTTT TTTGAACACG TACAAGAACT CAATCTGTGA CGTCTGTGGA 
    ACACGATCGC CAACGTCTTC TCTCTTGGGA TTTCAGGATT TGACTGATTC 
    GGGTCTCGAG AGTAACGACG CTGATTCCTC CGTCGGGTCT ATTTTCTTTC 
    CTCTGCGGCG GTGTATCAAG CGTAAAGCTA TGGATGATGA CGTCGTCGAG 
    GTCGATGGTG CTTCTGTTGT TTGCTCTGAA TCGCAAGGTG TCATGAAGAA 
    GAACAAAGAG ATTGAAACGA AAGGTCGGTT TTTTTCTACT CCCTANGGTT 
    TTAGGTCTTT GNGAATTTTG GTATACTCAT TGGGGCTCAT ACCTTANATA 
    TCNNNTNGAA AGACNANACT TATTACTGNN TGANNCCTGT TNATNTAAAG 
    NTNCNNNNCG GGNCNNNNAC NCNCNNNNC

AT1G11800.1

Model type
Protein coding
Short Description
endonuclease/exonuclease/phosphatase family protein
Computational Description
endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 386 Blast hits to 366 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 170; Fungi - 14; Plants - 104; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11806.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein, likely a tandem duplication of the immediatly downstream hypothetical protein which has since degenerated.
Link
InterPro Scan - TAIR