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13-2033-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 470777 [Map]; Strand: w
      • AT1G02350.1 - [+] show detail - protoporphyrinogen oxidase-related
        Distance: 84; Region: intergenic
      • AT1G02360.1 - [+] show detail - Chitinase family protein
        Distance: 1213; Region: intergenic
    Flanking Genome Sequence: 13-2033-1 - 5-prime edge 
    GCGATGACTG CTCCATCTCA TATTTTCCCC CAATTTTCTG TTAAGTTTTT 
    GGATTTGTGA AACCAGTTGT GTGCAAATTC AAGTAGATAC GTTTGGGATC 
    TTATGTTTTG TCGCCAAAAT TCCCATATAC AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 470696 [Map]; Strand: w
      • AT1G02350.1 - [+] show detail - protoporphyrinogen oxidase-related
        Distance: 3; Region: intergenic
      • AT1G02360.1 - [+] show detail - Chitinase family protein
        Distance: 1294; Region: intergenic
    Flanking Genome Sequence: 13-2033-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCGT 
    CATCGCTACA CTTTTGCTCT GTACAGAGAA TATTCCCTCA GAGTTTCATA 
    AGTCGAGTTG TATCCTCTGC TATCCATCTT AGTAATACTT GAGAGCTTCC 
    TTAACTTTGC AAGTTGCAAC TCAACCTGCC CAAATAAAAA ACAAGATAAT 
    GATTTTTGCA CTGTTCTCAT TGAAAAGGGT GAAAGAAAAC AGATTCATTA 
    GCATATAATA CAATACCTTG CAGAGATTGC CTCTGGCAAC ATTGTGATTC 
    CTTTCCTGAA AGAACCAACT GTTTGGGCCC TTTGGCTTTG ACAGAAGCGG 
    CCTCAGTTTC CCATTCCACA ACACAAACCT GGGAATGGGA AACAATATCT 
    ACCTGAATTA CGCACACAAC GACAAATGTA AATCCACTAA ACCAAAAACA 
    GAGCTTCTAC CAAAACTCTT NTAGTAAACT TGCAAACAAC GACAAGGCTT 
    AAATCCACTA AACCAAGACA GAGCATTCTA CTAAAACTCT TTTAGTGAAT 
    TTCAAACCAC TAAACTATCA GATACAAGAC AATTTGTTCT GNNGATAACT 
    AAATTTTTGC TTTCGAAAAT CATATACATT GGCTCAATTT AACGCTTCAT 
    GTAACAAAAT CGAATTAAGC GAATTACCAN GCCCCG

AT1G02350.1

Model type
Protein coding
Short Description
protoporphyrinogen oxidase-related
Computational Description
protoporphyrinogen oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: siroheme biosynthetic process; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02360.1

Model type
Protein coding
Short Description
Chitinase family protein
Computational Description
Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, leaf whorl, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2043 Blast hits to 2034 proteins in 421 species: Archae - 0; Bacteria - 465; Metazoa - 37; Fungi - 5; Plants - 1453; Viruses - 2; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR