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Mutant Lines
13-2059-1

13-2059-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17861344 [Map]; Strand: w
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -83; Region: promoter
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -179; Region: promoter

CNTGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCTG TGACCAAATT TGCAGATTCA TAGACGGAGA 
AGAAGCGGAA GACTGAAACA GAGAGCTAAC CTGAGGATGA CGAAGAGGGT 
TTACCAGTTA AAACCACTTA TTGGGCCTAT TATTGGGCCT ATCTTTTTAA 
CAGATTGGGC NTTTTCTATA AAATTCTTAG ACCTCTCTAG ACTCTAGGCT 
TCACCGGAGA AAGAAGAGAA ATCAATCGGA TTAGTTGCAG AAGTGCAATG 
CATTGCGGAT GTGTATTCGC TTCACAAACT GTGTCATCAC TTCTCCCATT 
TGAAATTAAA ACCTATGCGT CAAAGCT

3 prime edge [+] show sequence

Chromosome: 4; Position: 17861300 [Map]; Strand: w
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -39; Region: promoter
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -223; Region: promoter

AATTTGGTTC TTTCTGTGAA TCGAACTCGT TCTACAAATG CAGATTAACA 
TAGAACCCCC ATGTGATTGT TTGATCACTA TTTGCGACTA GATGTATTTG 
CCGGAGAAAT CAGTTCTTCT GGAATTGATC AGCCGATGCA GCTCTCTTCG 
CGTTTTCAAA CAGATACAGA CTCAATTGAT TACTCGTGAT CTTCTTCGTG 
ATGACTTAAT CATCAACAAA GTCGTGACCT TTCTGGGCAA ATCCGCAGAT 
TTTGCATCTT ACAGCTCTGT AATTCTCCAC AGTATCCGTT CTGTGTTGAG 
CTCTTTCTCA TACAACACGC TTTTATCAAG CTATGCAGTT TGTGATAAAC 
CAAGAGTGAC GATTTTTGCT TACAAAACAT TTGTGAGTAA TGGGTTTTCA 
CCGGACATGT TCACGTTTCC TCCAGTTTTT AAGGCTTGTG GGAAGTTTTC 
AGGGATCAGA GAAGGGAAAC AGATTCATGG AATTGTTACG AAGATGGGTT 
TTTACGATGA TATCTATGTG CAAAACTCGC TTGTTCATTT TTATGGGGTG 
TGTGGAGAAT CAAGGAATGC ATGTAAAGTG TTCGGTGAAA TGCCTGTGAG 
AGATGTTGNT TCNNGGACTG GGGATTATAA CTGGTTTCAC NANGACTGGG 
TTGTNTAAGG AAGCTACCAC CCNGGCCGNN ACACNCNGGN CCNNNANNNN 
NNNNG

AT4G38010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38020.1

Model type: Protein coding
Short Description: tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description: tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link: InterPro Scan - TAIR