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13-2093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2948896 [Map]; Strand: w
      • AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 13-2093-1 - 5-prime edge 
    NTTATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATAAAAG ATAAGTCCTA GGACTGAGTG TAATGGTTCA AGATCAGTGT 
    TAAGTAAATG ACGGCAACTC TATTGTTTTA AAGTTGACAG CTTTCTTTAT 
    ATATTATGGG GTTTGATTCA GAATTTTGTT TTTAATAAGG AAACCAAGTC 
    AAGTCTATAA AAAGATTTTG CAATTGTGGA GAGATTGTAT GTATTCAAGT 
    ATTCAACAAC ATCAATCAAT ACTTACTAGT TTTCTGAATA ATTTTTAAAA 
    AATCCTAGAA TCAAAAACCT CATGATTTTA TAAAACAGAG TATCTGCCTG 
    ATTGTGCTCC TCCAGGAAGG GAGAAGGTTT GGTTAGTTAT GTCTTCAAGA 
    ACACGCTTGA GTTCAGCTTT CGCTGTCTTA ACAGATATTT CGGTAGGCCC 
    TTCGACGAAC AAATAGAGCT TGCGTTCCTC AGGTCCCGGG ATACGTCCTG 
    CCTCATAAAA CTTACCTCTA GTGGTAATGG AAGCTCCACT CCACTCTGAT 
    ATTGGTCCCA GCGTTNCTTT GTGGGTAACT TTCCACCGAG CATTCTGTGG 
    GAAATCATTG ATTTCCAATT CTGCTTCATA GTGTTCAGGT ATCGCATCAG 
    CTTGAATCTT TGCAAGGTAC TGTTGCACGT TAGCAGCAGC AATCATGGCT 
    GCAACGCGGC CTGCTCCATC AGTAGGAGGG AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2948868 [Map]; Strand: w
      • AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 13-2093-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CACAACAACT GAACAAAAAG TTATGACGAG ATTTTAGTAC AAGAGTAACG 
    GGTGGATGAG AATGAGGTTG TCTTGCAACT AGTAGAAAAA CCCCTTACAT 
    ATATTATACC TACCATTCAC CCAACTAGTC CTGGTCAAAA TCTGCGGAAG 
    CCCCCTATAG CTTCAAAACT TGGCTTATGT TTCTCCTCAA AACAACAAAG 
    ACCTTTTACA CAATTCCCAC ATGATGATGC AGTGACACGA TTGTGATTCC 
    AGTGACGTAT AACACCAAAG TTTATTAAAC ATGGGAAACC AATGAGTAAA 
    CCTGCCAATA CGGTGAGAAC CATATAACTC TTATGCAAGA CTTTACAAAG 
    TTTGCAAGAA GCCTGAACTG GTGCTAATAC TCAAAATACC GTAGTGTATA 
    TATCTTGTAT CCCAGACTGT GACTAACTAT AGAACTCTTA TTGCAAACCT 
    TAGAGTTAGA GAACTGTCAC TAGACTTATA TCTAACCATG AACTCATGTG 
    ACTTCTAATA GTAGTGAAAT GTTTTCTTGT ACTGAATTTA AAAGGTCAGA 
    GGAAAAAGAG GGAAAAACAC TTACTTGCTA GCTGATGGCT CATATTTTTG 
    TTATGCTGNT TTGNCGCTTG GTGAGTTCTT GACAANGGAA ACAACGCTTG 
    GGAGCTCGGN CGTCACGTTG TCATATGATA ANAAGACTTT CCTNTGNNGC 
    ATNATTACAT TCCGACTAGC TGAGGTANAT TAATTTGATC ACCCA

AT3G09600.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR