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13-2104-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1176271 [Map]; Strand: c
      • AT2G03850.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: -628; Region: promoter
    Flanking Genome Sequence: 13-2104-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AGGGAAGCGA AGTGGGACAT GCGTCTGCTC AGAAAGGGCA AGATGTTAAT 
    GATCATGTAG ATAGAGCAAA GTACTATATG TTTGAGAAAG CTAGTGAAGC 
    AATCGACAAT GTGGCCTGAA ATTGCTCAGT TTGCTTCGGA GTTTGTGACN 
    GGAGAAAGGC AAGGAGACGA AGAAAGAAAC TGCTTCAATA TCGGAGAAAG 
    CCAAAGACTT CATTGTTGAA AAAGCCGGTG AAATTATAGA TATAGCCGAC 
    GGATGTGAGC AAGAAAACGG CCAAGTACGT CGGAGATAAA GCCAAGGAGG 
    TTAAAGAAGC TATAATGCCT CCAAAAACTT AAAGTAAAGA TTTGATGCAG 
    CCCTAAACAT ATACGAGGTC TTGAGGCAAT GTAGCAAAAA ATATGTATTA 
    TTATGCGAGA TAATGAAACT GTTATAATCA GAACTCTAAG ACACGCCTCT 
    TTAATCATTG GAAAATTCTC TTCTAAGTAT GTAGTATGAG ATAATAATTA 
    GGATC

AT2G03850.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G03740.1); Has 577 Blast hits to 318 proteins in 93 species: Archae - 1; Bacteria - 101; Metazoa - 17; Fungi - 21; Plants - 408; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR