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Mutant Lines
13-2120-1

13-2120-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030366 [Map]; Strand: c
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (CDS)
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (CDS)
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (CDS)
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (CDS)
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -749; Region: promoter
Flanking Genome Sequence: 13-2120-1 - 5-prime edge
```
GTGAGTACTC AACAACGCAC GGACGATGAC TCTTCTCAAC CGGTAAAAGC 
T
```
3 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030482 [Map]; Strand: c
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -633; Region: promoter
Flanking Genome Sequence: 13-2120-1 - 3-prime edge
```
GTACTCACCA TGACAAGACG CGTAAACACT AGAAAATCCT AGGCGATTCA 
AGCACAAAAT ATAGATATCT CGATCTGATT AAGCACCCAG ATCATGATAA 
TTTCGGAATC TAACAGGAAT TGGAGACTTT AGAGTCATGG GAGAGAGATT 
GAAGAAGGAG AAAAGAGCCA AAGGAGGAAA GAAAAAGTGA GAGAAGAGCG 
AGAAAAGCTC GAAAACGAAA TCGGGTAAAA ACCCCCTAAA TCGATGGATA 
GGGAAGCTCT CGACTGGAAT NNGCCCCGGG AAGTCAAAGA AAGCGGAAAA 
TATCATANAN ANAAAATCAT TTTGACTTGT TCAAGAAGGG AGAGAAGGAG 
AAGCCAAGGA CAATAGTTTT TTTTTGGTTA ATCGAATT
```

AT2G25850.1

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 814 Blast hits to 806 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 214; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.2

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.10); Has 815 Blast hits to 807 proteins in 221 species: Archae - 0; Bacteria - 15; Metazoa - 260; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.3

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.4

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9).
Link: InterPro Scan - TAIR

AT2G25870.1

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Link: InterPro Scan - TAIR