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13-2157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4543768 [Map]; Strand: w
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: 26; Region: intergenic
      • AT1G13270.1 - [+] show detail - methionine aminopeptidase 1B
        Distance: -1185; Region: intergenic
    Flanking Genome Sequence: 13-2157-1 - 5-prime edge 
    TTTATATGTA TGCATTAGCT ACTGCTTATG GTATTTGCTG CTTTTTGTAT 
    ATAGATTTGA GGAGTTATGA CTTATGCGTA CGTAATTTTA TAAAATAACT 
    CCAACCAAAA GAGAAAAAGT TTGCAGGGTC TGTAAACGTA TATAATCGTA 
    TGATGATATG ATAGACCATA CTCCGATACA AATAACCAAA GAGAAAGATA 
    TTTTAAAATG AATGCTATTT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4543680 [Map]; Strand: w
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 13-2157-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCCCATA 
    CACATAAAAT GAAAAGAAAC CAAGGTAAGA TTTGGTAACA ACATTTTCAT 
    CATCTCATGC TAATAAAACT CTTGAGACAT ATCTAAGTAA CCCTTTTTAA 
    AATTTATCCT ATAAATAAAA TTTACAGTTC ATCAATACAA CAAAAACAAC 
    TCATGAACCT TTGGTAAACA AGAAGAAAGA AACCGATGCA AATAAAGAAA 
    ACGAAAATGG AGTTTTTAAA AATTATTAAA ACAACAAAAG AAAAAAAAAN 
    NAAAAANAGT NGTTCCNAGG NGNGAAAAAN GCGGTNGTTT TTNGNTNCCC 
    CCCACCNATA NCNTNTNAGT NTCGTNNNNT NTTTNGTTNC CTNCNACGTC 
    GTTTNTNGAN CTNTCCGGGG AAANGTTANC TCCNAACANT NTNAAANCCC 
    NNCCCGCTTT TAANTNNGNC CCGGNTNTNN ANTTCCNCCC ANNGTNCAAC 
    NGTGGANCCN GNCCGTTANA TNTNCNGAAN CTANCCNNNT NCCCNNCCCG 
    TAAATTNTTT TCNTTAACAA ACCNGNTCCA NCCTTTAGTN AAAANNTANN 
    TTTNACTNCN GTNCCANTNC AAGTANNGGA CCCTCCACNN TTTCCNGTTA 
    ACGTCCTCAA NGTTNANCAN CNNTCCTTTC ACGGAAACGT TNCTTGACGG 
    TAACGGAAAA NGTTTCTCTG CGGGATGTTN NGGNNTAACC AAACGGTTTA 
    NCTTCCCAAC GTNNNTTGGG GTNNCCGTTT TTTAAAANAG GGCCTCCGCN 
    GATNTAANCC CCGTGNNAAA AACC

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13270.1

Model type
Protein coding
Short Description
methionine aminopeptidase 1B
Curator Summary
Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.
Computational Description
methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 18008 Blast hits to 17988 proteins in 2832 species: Archae - 481; Bacteria - 12145; Metazoa - 393; Fungi - 260; Plants - 253; Viruses - 0; Other Eukaryotes - 4476 (source: NCBI BLink).
Link
InterPro Scan - TAIR