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Mutant Lines
13-2160-1

13-2160-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 23136219 [Map]; Strand: c
- AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -906; Region: promoter
- AT3G62550.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

GGNATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCTAC TATCTTTCTC TCCTTTGTTT CCTCCATTTC 
TTTACCTTTC TAAAAAAAAA AACNGNTTTC TTTNGCTTTC AATTNTTANA 
NAAAAAATNT NTTATGAAAA AAACCTGNGG GAAAAANANA TTATGATGGG 
GTTNCTATTT ANNCAATTAG CTNGGCAAAA CCCNCTNGAT TTCTNATTTN 
GGAATNAAGG GNTTNNNTTT AAANNTTNGC ANACCCTNTC CTTNGGGNAA 
TTTTTNCATT AAANAANANN TAANCCCCCN TNGGATNGNT NGNTANCCAA 
ATCCANAAAA CTNTCGTTTT TNTTTCNGGG GGGACTNTTA TNTACAATNN 
GCNANNTTTT TANGNAAANA ATNCANGATT TTTTATAAAA TNATTTNANG 
CTTCNGAACN ACTANGTTNT TATANATTTT NGGGGAATCA ATNTTTANNA 
ACTNAATCGG GAATCNGATT TNCCNCANAT NTCCCTNAGT TTTATNTNCA 
TCCCNCAGGG TTNTGGANNA TNGANGTTAC NCNGATNGAC GGATCTNGAT 
TTNCAGTTNN GGAANATCCA TAAACNCGTN TACAAAGACA ACGNGACCTA 
AGANAAATGN GGGATAGAAT CNANTNANTC TAAAAATAAA TNGGGCCCCN 
ANAAAAACTT GGNAAAATTT CCGACCCTNA ACNAAAAAAA NANGCNTNCC 
NAACCCCCNC CCCTAAAAAA AAAAATNTTT TTNCNTTGGN CNTNANGCNC 
CGGGGGCCCT ANGG

3 prime edge [+] show sequence

Chromosome: 3; Position: 23136222 [Map]; Strand: c
- AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -909; Region: promoter
- AT3G62550.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TCGGGTAGCA GTAGACGAAA GCGAAGAGAG CATGGAAGCT CTGTCATGGA 
GTCTTGACAA TCTTTTTCCA TATGGTTCCA ATAATACACT CATCCTCCTC 
TACGTCAAGC CCCCTCTTCC CGTTTACTCT TCCCTCGATG CCGCAGGTTA 
GTCCTCGTTC TTTCACGATT CATATCTTTC CCTAATTATA ATCTGTTCAC 
TTTAGTTATA GATTTTTGTT TGGTCGATTT CCAGGGTTTA TAGTGACAGG 
AGACCCGGTT GCAGCTTTGA AGAAGTATGA ATACGAGCTC GTGGAATCGG 
TCATGGCTCG GTCTCGAACC GTGTACCAAG ATTATGAGTC TGATGTAAGC 
T

AT3G62540.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62550.1

Model type: Protein coding
Short Description: Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description: Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT1G09740.1); Has 3064 Blast hits to 3005 proteins in 732 species: Archae - 271; Bacteria - 1876; Metazoa - 108; Fungi - 22; Plants - 723; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link: InterPro Scan - TAIR