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13-2192-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20795247 [Map]; Strand: w
      • AT5G51170.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 0; Region: exon1 (CDS)
      • AT5G51170.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT5G51174.1 - [+] show detail - SNOR30; snoRNA
        Distance: -689; Region: promoter
    Flanking Genome Sequence: 13-2192-1 - 5-prime edge 
    GNGGATACAA NGNACTCNAN NNGCACANGC GGTGGAGGAG GCANGGAAAT 
    CAGAATCTGN CTNTCCACAA TTCGCANNAA CAGGGACTCG CCGGAGAAAG 
    ATCATCGGTA TCGGAATCCG ATGAAGAGTC GCCGTAGGAC GCTCTCAATG 
    CTTCCATTGC CCGTAAATTA ATTAAAACAG AAAAACCAAA CAGAGAAACT 
    ATTTAAACCA GATTTCATTT TCAAGCATAA ACCAGATTAA ACCAAAATGA 
    TTCTAATATA ACCAAATTAA AGCGAACCGA ATATAAACCG AACCATCCGC 
    GAAGACAAAG CAGCACAATT CGGAAACCAT TAACGGGCCG AGAATGGGCC 
    TTCACCGAAG ATCAAAGCAA AACCCTAATT ACGTTCCCTA TAAATTAGAC 
    ACCAATCGCC GGACATTTCA TCATATCAGT ATTCAATAGC ATCTAGGGTT 
    CTCTTCTTCT GTTATTCAAT CGTCGTTTTT ATGGGTCTTT TTGGATGATT 
    GATAGTTTTT AAGTTTCTTT ATAATTCTCT AATCGAGAGA GGGAGATTGG 
    CAGTGATGAC TCGGAAATTT CAAGCTCAAC AGACCGGAAT TAGGCGTTTC 
    TTCCAATTTA TTGGTTGACT CGTTTCTGTG TCGATAACCC CCGCTGATCT 
    GAGCCTTCCT CTCTTTCATT TGATTCTGAA TTNGTTTGCG TTTNGAATTT 
    GGAAATTCTC TGGNAATCGA TTANANGTTT TNTCCGATTT TAAAATCGGG 
    GGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20795131 [Map]; Strand: w
      • AT5G51170.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 0; Region: intron1 (CDS)
      • AT5G51170.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
      • AT5G51174.1 - [+] show detail - SNOR30; snoRNA
        Distance: -805; Region: promoter
    Flanking Genome Sequence: 13-2192-1 - 3-prime edge 
    GTATCCACAG GTGAAGATGC TCATCAATTG TCTCTGTGAT TGTTCCTCAA 
    TCAAATTCTT AGAGATTTCA CTCATCACTT ATTTTTTATT TCGTCTGAAC 
    TTGAAGGTTC ACTGGATTTC TTCTCAACAG AGCCTGGAGT TCGTGTAAGA 
    AACTTTCCTC ATGTCGATGG AAATTACGCT TTGCACGTTT ACGTACCTGG 
    TATTTGTTCA TTTCGTAGCT TAAAATTTCT GAGAGTTTCG AGGTTTTTGA 
    ATT

AT5G51170.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51170.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51174.1

Model type
Small nucleolar RNA
Short Description
SNOR30; snoRNA
Curator Summary
Encodes a C/D box snoRNA (snoR30). Gb: AJ505639
Link
InterPro Scan - TAIR