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13-2198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • albino value (PATO:0000968)
    (Seedling::albino)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1127436 [Map]; Strand: c
      • AT3G04260.1 - [+] show detail - plastid transcriptionally active 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2198-1 - 5-prime edge 
    CTTGTTCCTC AATCCTCCGT TTCCCTCCAA TTCAATCCAC CCAACTCCTC 
    GTCGTGCCGC CGGAATATCC TCCATTCGAT GCTCAATTTC TGCACCGGAG 
    AAGAAACCGA GGAGGAGGAG GAAGCAGAAG CGCNGGCGAC NGGAGCTTGA 
    GAATGACGAC TCTTTGTCTT TCGGAAGTGG TGAAGCTGTC TCCGCTCTGG 
    AGAGGAGTCT CCGCCTCACT TTTATGGACG AGCTTATGGA ACGAGCTAGA 
    AATCGAGATA CTTCAGGTGT TTCTGAGGTT ATCTATGACA TGATTGCTGC 
    TGGGCTTAGC CCTGGACCTC GTTCTTTCCA TGGTTTGGTT GTAGCTCACG 
    CGCTTAACGG CGACGAACAA GGCGCGGTAT ATGCTTCTCT CTATAGCTTA 
    AATTAAAGAC GTAGACTTTA TGTTTTTAAG AAATCATACA ATGCTGGAGC 
    TTAAACTAAA TCGAATTTGA ATTGTTGTGC TTTATAGAAC TTGAGTTATG 
    GTTTAAGACT TTACAAATTT TTTGTATCAA AATTAGAACT TTACTCTTTC 
    TCATAGCTTA TTGAGTGTGT TTGAACTGAA AGATTGCTTC TTTTTTTTTT 
    GCTNGGGGGG NGNNNGNNNG NNNNNGNNNA NNCCCNCCCT NNNAAAGGNN 
    NNNNGGGCNN GCCANNNNNC NNTTNNNNNA ANNNNANNGN NNNNG

AT3G04260.1

Model type
Protein coding
Short Description
plastid transcriptionally active 3
Computational Description
plastid transcriptionally active 3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 11987 Blast hits to 8407 proteins in 477 species: Archae - 24; Bacteria - 285; Metazoa - 3588; Fungi - 1065; Plants - 3982; Viruses - 208; Other Eukaryotes - 2835 (source: NCBI BLink).
Link
InterPro Scan - TAIR