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13-2198-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
seedling (PO:0008037)
  • albino value (PATO:0000968)
    (Seedling::albino)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1127436 [Map]; Strand: c
      • AT3G04260.1 - [+] show detail - plastid transcriptionally active 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2198-1 - 5-prime edge
    CTTGTTCCTC AATCCTCCGT TTCCCTCCAA TTCAATCCAC CCAACTCCTC 
    GTCGTGCCGC CGGAATATCC TCCATTCGAT GCTCAATTTC TGCACCGGAG
    AAGAAACCGA GGAGGAGGAG GAAGCAGAAG CGCNGGCGAC NGGAGCTTGA
    GAATGACGAC TCTTTGTCTT TCGGAAGTGG TGAAGCTGTC TCCGCTCTGG
    AGAGGAGTCT CCGCCTCACT TTTATGGACG AGCTTATGGA ACGAGCTAGA
    AATCGAGATA CTTCAGGTGT TTCTGAGGTT ATCTATGACA TGATTGCTGC
    TGGGCTTAGC CCTGGACCTC GTTCTTTCCA TGGTTTGGTT GTAGCTCACG
    CGCTTAACGG CGACGAACAA GGCGCGGTAT ATGCTTCTCT CTATAGCTTA
    AATTAAAGAC GTAGACTTTA TGTTTTTAAG AAATCATACA ATGCTGGAGC
    TTAAACTAAA TCGAATTTGA ATTGTTGTGC TTTATAGAAC TTGAGTTATG
    GTTTAAGACT TTACAAATTT TTTGTATCAA AATTAGAACT TTACTCTTTC
    TCATAGCTTA TTGAGTGTGT TTGAACTGAA AGATTGCTTC TTTTTTTTTT
    GCTNGGGGGG NGNNNGNNNG NNNNNGNNNA NNCCCNCCCT NNNAAAGGNN
    NNNNGGGCNN GCCANNNNNC NNTTNNNNNA ANNNNANNGN NNNNG

AT3G04260.1

Model type
Protein coding
Short Description
plastid transcriptionally active 3
Computational Description
plastid transcriptionally active 3 (PTAC3); FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); BEST Arabidopsis thaliana protein match is: genomes uncoupled 1 (TAIR:AT2G31400.1); Has 11987 Blast hits to 8407 proteins in 477 species: Archae - 24; Bacteria - 285; Metazoa - 3588; Fungi - 1065; Plants - 3982; Viruses - 208; Other Eukaryotes - 2835 (source: NCBI BLink).
Link
InterPro Scan - TAIR