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Mutant Lines
13-2205-1

13-2205-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 4010293 [Map]; Strand: w
  - AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
    Distance: 0; Region: exon1 (CDS)
  - AT1G11890.1 - [+] show detail - Synaptobrevin family protein
    Distance: -486; Region: promoter
Flanking Genome Sequence: 13-2205-1 - 5-prime edge
```
GCCACAAAAT GGTTAAGAAG AGAACGAGAA GTCGCGAGAA GATGGCAGTA 
TTTGATCAAG ATGGTTTCTT TCCTTGATTT CGAGTTTGAT TCCAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 4010176 [Map]; Strand: w
- AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
  Distance: 0; Region: exon1 (CDS)
- AT1G11890.1 - [+] show detail - Synaptobrevin family protein
  Distance: -603; Region: promoter

TTGTGGCGGA GCTTACTCCA ACCGTACGAT ACATCCGCTT CACTCAATCC 
TCCTTGCTTG TATCACAAAG AAGATTCTTC TTCATTTATA GTAGCCAATG 
CAGCTTCGAG ATCCCTTGAA AACAGTGTTG TCTGGGACAG TGTGTATTTT 
CTCCGAATCA CCGAGTGTGG TTATGAGTAT GAGCAGACTT ACGCCTTCTT 
GCCTCTGCTT CCCTTCTTCA TCTCGCTTCT CTCTCGCACA GGTTTTGGAA 
TTTAAATATC TACCCACTTT GGTTGTATCA TTCCGGTAGT AACTGATTCT 
TTTTGGATTC AGTTTTTGCG CCTTTGGTTC CATTGATTGG TCTTCGAGCT 
GTGATGGTGT TGTCTGGTTA CATTGTCAGC AACTTAGCCT TCATATTTGC 
TGCTATCTAT CTATTCAGGT ACTTCTTTTA ACATTGATCC AATATCGATT 
ATTTTGTCTC GAAATAAGTC AAGTCATGAG TTTTGGAGCT CTACAAGCTA 
ATGGTGTTTG CTATTCACCG TGTCTTACAC CAGTCGTTGC TAACAGGGTT 
TCAGTTATTA TCTTGAAGGA CACTGAAGCA GCATTCAGAG CTTCGATTAT 
CTTCTGTTTC AATCCNGCGT CCATATTCTA TTCGTCAATG TAATGAATT

AT1G11880.1

Model type: Protein coding
Short Description: transferases, transferring hexosyl groups
Computational Description: transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G11890.1

Model type: Protein coding
Short Description: Synaptobrevin family protein
Curator Summary: member of SEC22 Gene Family
Computational Description: SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link: InterPro Scan - TAIR