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13-2214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19599547 [Map]; Strand: c
      • AT3G52870.1 - [+] show detail - IQ calmodulin-binding motif family protein
        Distance: -3725; Region: intergenic
      • AT3G52880.1 - [+] show detail - monodehydroascorbate reductase 1
        Distance: 1665; Region: intergenic
    Flanking Genome Sequence: 13-2214-1 - 5-prime edge 
    TATAGAATGA CACAAATCTT TCATTTCATT ACTAAACTAA CACCTACTAA 
    AGTAACAAAA CTCGTGTNCG CTTTTAAAAG TTATGTTAGA TTGGTCAGAT 
    TATTTTTTGA TCAGCCGATT TTATTGACCC TTTCAACGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19599613 [Map]; Strand: c
      • AT3G52870.1 - [+] show detail - IQ calmodulin-binding motif family protein
        Distance: -3791; Region: intergenic
      • AT3G52880.1 - [+] show detail - monodehydroascorbate reductase 1
        Distance: 1599; Region: intergenic
    Flanking Genome Sequence: 13-2214-1 - 3-prime edge 
    TGANNCGGNA GAGGTATTTT ATNGACCGTT ACCGACCGTT TNCATCCCGG 
    ATTCTATAAG TAATTTCANT TTAATTAANG CATGCAATAG TGAACTTGGT 
    TATAATTTGG CCCACAGAAA GATTTACTCA TTTAACCATG AGAAAGACAT 
    GACAATATAA AATAAGGNGT TCTTTAATTA GTATGNCTAT AACGTTTGAG 
    ATATATACAA GTAGAATTGT AAAANATATA CGCCTCTATT TCTTGCATTA 
    TNTAACGTGA TATCGAAGGA TGCTTTTTNT TTNTTACTTT CCACCAAAAG 
    GGATTNACAT GAATTNTTNC TANCANATTN CNAANGTTTC TAAGTCTGCT 
    ANTCAANTAN TGNAAAANCN TCTAGCAAGA CGACTGTATC NACTACACAT 
    NNGCGGCATT CAACNGNTNT ACTACCANGC ATCCGAAACT NCTCCAGGNN 
    CNGCANAGTA NAGANGTAGN AGATNGNTGT TTGAGAGGGC NANAGANAAA 
    NNGNNNNCCC GGNNNNTNNC CANCAGNTNC NANTNCNANG NACNNCNANN 
    NNACNATNCC ANNGNGNCCA TANCCGGCAT TCNNTNNCTN GANCANGTNN 
    CANNNANNAC CCCCNNCANT GTTGNNACGA GTNTCACCGN CATNNGNGNC 
    NANCCNNNNN TANATNNNNN NNGNNNNGCG GNTGTACNAN GCACAGTANA 
    NGTANNGNGC GNANAGTAGG NTNGANGAGC AGAGAGAAAA GATNANGGNN 
    NAACCGTNGN NNCCCNCCNA CNTCNANCGA TANCCCNGAA TNNGAGCNCN 
    CAAAANCGAA GANGNAANTC GNNGNGATAC CNAANANGGN AANGNGNNAN 
    ANAGTNNGCN CAATACNGCN NNNCGC

AT3G52870.1

Model type
Protein coding
Short Description
IQ calmodulin-binding motif family protein
Computational Description
IQ calmodulin-binding motif family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 341 Blast hits to 277 proteins in 58 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 100; Plants - 209; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52880.1

Model type
Protein coding
Short Description
monodehydroascorbate reductase 1
Curator Summary
Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2
Computational Description
monodehydroascorbate reductase 1 (MDAR1); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, peptidyl-cysteine S-nitrosylation, hydrogen peroxide catabolic process; LOCATED IN: peroxisomal matrix, apoplast, chloroplast, peroxisome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31553 Blast hits to 31492 proteins in 3048 species: Archae - 709; Bacteria - 24685; Metazoa - 865; Fungi - 647; Plants - 730; Viruses - 0; Other Eukaryotes - 3917 (source: NCBI BLink).
Link
InterPro Scan - TAIR