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13-2217-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1693486 [Map]; Strand: w
      • AT2G04810.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 3520; Region: intergenic
      • AT2G04820.1 - [+] show detail - transposable element gene
        Distance: 91; Region: intergenic
    Flanking Genome Sequence: 13-2217-1 - 5-prime edge 
    TTATAAACTA NCAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCATTA CATTGATAGG AATGATTTAC AATATATATA 
    GAGGCTTAAC CATAGGGTTT AGCTCATGAA TAATTACATT TATAACCTTA 
    ACTATACTTC TCCTTTACAC ACCCCCTCAA GATGGAGGCA GTTCCTTGAC 
    TCCAATCTTG GAATTGATTT CTTGAAACCT TGGACGATGA AGTGGTTTTG 
    TGAGAGCATC TGCTAACTGA TCATTGGTAG AGACATGTGT AACCCGAAGT 
    GCGCCGGACT GTATGTGACC CCGAACGAAG TGATAGTCTA GAGCAACATG 
    TTTCATTCGC GAGTGGAATA CCGGGTTGGC ACAGAGATAT GTAGCGCCCA 
    TGTTATCGCA GTAAATAACG GGTGCCCGTG ATAACGTAAT ACCCATTTCG 
    GACAACAATG AGCAGATCCA TTTCAACTCC GAGGCCGTGT TAGCAACCGC 
    ACGGTACTCT GCTTCTGTTG AGGAACGAGA AACACTCTTC TGCTTTTTGG 
    ATGTCCAAGA TATCGGGCTG CCACCAAAGT AAACAATATA GGCATTCGTC 
    GATAAGCAAT CACTTATGTC ACCGGCCCAA TCCGCATCCG AAAAAGCATG 
    AACAGTAAGT GGAACATCGG CCCGAAGAAA GATACCATGT GATGTTGTGC 
    CAAGAAGATA TCGCAATACT CTCTTAGCAG CGCGCCAATG TTCATCTGTT 
    GGTTTGTGCA TGAATTGAGA CAAACGATTC ACCGCAAATG CAATATCCGG 
    CCGAGTAAAA G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9932344 [Map]; Strand: w
      • AT1G28327.1 - [+] show detail - unknown protein; Has 52 Blast hits to 52 proteins in 10 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2217-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTAACAAAAT 
    TGGTATCAAT ACACAATACA ACCCACGTTC ATACCTTCAT CATCATCAAC 
    ATGCTTTCGA ACCTTTCTCA TTCCTTTAAA AGGAATAGGT CGAAAGATGC 
    ACTGACCTGT AAGGTCTCTT CGAATTACAA AATTGGTTGA CATGCGTTTG 
    CCGCTATCTA CTTTAGCTTG TCTCTTCAAT GTTTGCATAT AACTGGCTTG 
    GCCCTGTTTG AAAAAAGAAG AAGTCATGTT TCGATTAAGT GAATAGAGGA 
    ACACTANTCA AAATCATATA TAAAAAGCTA AGAGACTTTG GAAGCTAAAC 
    ATAATATTTT TAATAACCAA ACCAACCTGC TGAATATTAA TCTGTTCTGT 
    TTCACTGAGT ATTAGCTCCT GCGGCAACAT AAAAGCAAAA ATAAATAAAT 
    CAGATTTGGT CTATCTTGTA ATGACGAGAA TTAAGAACAC TCAAAGATTA 
    AGAATAACTC TCTTATTAAA CTCTAGAAAA CTAACTCAAA AACGAAAACT 
    CTCTTTAGTC TCTCAAATCT CTCACAAAAC TCATAAGAGA TATCACACCT 
    TGATATCTCC TTATATAAGA AAACTCTTGA CCAAATCCAA AATCAACTAG 
    GAATGTATTT AGAAAACTCC TAAACACATC TTAGATAACT CCTAAAGATC 
    CTAAGCTCTA TCCCTTCACC ACATCTTGAA CACCAATGAG ATCTCTCATC 
    TNTTTAAACT TCATTCTTAC AAGGGCCTTT GTTA

AT1G28327.1

Model type
Protein coding
Computational Description
unknown protein; Has 52 Blast hits to 52 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04810.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT2G04840.1); Has 335 Blast hits to 324 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.8e-214 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR