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13-2219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19164235 [Map]; Strand: c
      • AT2G46662.1 - [+] show detail - unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 pro...
        Distance: -6193; Region: intergenic
      • AT2G46670.1 - [+] show detail - CCT motif family protein
        Distance: 179; Region: intergenic
    2. Chromosome: 2; Position: 19235255 [Map]; Strand: w
      • AT2G46790.2 - [+] show detail - pseudo-response regulator 9
        Distance: 179; Region: intergenic
      • AT2G46800.2 - [+] show detail - zinc transporter of Arabidopsis thaliana
        Distance: -2179; Region: intergenic
    Flanking Genome Sequence: 13-2219-1 - 3-prime edge 
    GGTATATAAA TCAAGTTTTA TAGAATCTGT TTCTTGTTGG TATGTATCGA 
    GAGAGAAGCG GCCTGGATAT GATCACAACA AGAAAGTAGA AGCCATGTAC 
    GAATGAATGC CAAAGCAATA ATAGCCAATG ATTGCAGACT ACTCAACTTT 
    GCTTCGAATT GAACTAAGTA GAGTCATCAT AAAGAAGAAA TATTTCTCAA 
    CTTAACGAAA TTGGAATTAC TGTTTTAGCT TAGCCTGATC ATTTGCAGAC 
    ATATATACAA AAGTTGCCCC AGTATCTCAT ATTAGCTGAG AAGAAGAAGC 
    CAATCAAATA CATAAAAAAA AAANNCCCCC TAAANATNGC AAANNCTAAA 
    NAAGTTTNNG TTNTAAAANC NCCAAAANAA NTCAGNGGAA AANCNGAAAN 
    ANCTNTTNNT NATTTTGNAA ACCCNTTTNA ATTACCANCC NGGGCCGNNA 
    ACCCGCGNGC CCCTAAAA

AT2G46662.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46670.1

Model type
Protein coding
Short Description
CCT motif family protein
Computational Description
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46790.2

Model type
Protein coding
Short Description
pseudo-response regulator 9
Curator Summary
Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
Computational Description
pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46800.2

Model type
Protein coding
Short Description
zinc transporter of Arabidopsis thaliana
Curator Summary
Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis.
Computational Description
zinc transporter of Arabidopsis thaliana (ZAT); FUNCTIONS IN: zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular zinc ion homeostasis, zinc ion transport, response to metal ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: metal tolerance protein A2 (TAIR:AT3G58810.1); Has 17747 Blast hits to 10591 proteins in 2218 species: Archae - 164; Bacteria - 10632; Metazoa - 2900; Fungi - 834; Plants - 528; Viruses - 26; Other Eukaryotes - 2663 (source: NCBI BLink).
Link
InterPro Scan - TAIR