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13-2239-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 316786 [Map]; Strand: c
      • AT3G01910.1 - [+] show detail - sulfite oxidase
        Distance: 0; Region: intron3 (CDS)
      • AT3G01910.2 - [+] show detail - sulfite oxidase
        Distance: -74; Region: promoter
      • AT3G01910.3 - [+] show detail - sulfite oxidase
        Distance: 0; Region: intron2 (CDS)
      • AT3G01920.1 - [+] show detail - DHBP synthase RibB-like alpha/beta domain
        Distance: -646; Region: promoter
    Flanking Genome Sequence: 13-2239-1 - 3-prime edge
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCG 
    TGAGATGGAG AGATACAAGA TAAAAGTTGG AGAATGTAAA GAGAGGCAAA
    TAAATAAAGG TACCTGATGT CTTTGATAAA GAGCTTTCTC GGGTTCTGGA
    TCAATCCAGT AAGGGTGACG GAGTAGCTGG TTTGGCAAAA GAAATAGCAG
    AAATGAGCNG GAGGAGGCAA AATTGAAGAT GAATGAGAGT GAGAGAGAGA
    CCTTTGAAGG TGATCAACAA TGGGGATGGG ACCATGATTT CGCTTGTAGA
    AAAGGTCGAC GGGAGTGACA TAAGATGAGA CTAAGGCCGA GCGGGGAGGC
    TCGGCGTTGA AAGGTTCCTG CGGATCACCC AAATTTAGAT GCCATGAAGA
    AAAAGGCTAT ATCAGACTAG TGACTGATTC GATTGGAAAG AGAGAAGAAG
    AAGAAGAAGA AGCT

AT3G01910.1

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 4198 Blast hits to 4195 proteins in 919 species: Archae - 144; Bacteria - 2268; Metazoa - 143; Fungi - 280; Plants - 245; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01910.2

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01910.3

Model type
Protein coding
Short Description
sulfite oxidase
Curator Summary
Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
Computational Description
sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 3266 Blast hits to 3265 proteins in 737 species: Archae - 124; Bacteria - 1570; Metazoa - 141; Fungi - 268; Plants - 245; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01920.1

Model type
Protein coding
Short Description
DHBP synthase RibB-like alpha/beta domain
Computational Description
DHBP synthase RibB-like alpha/beta domain; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 7227 Blast hits to 7227 proteins in 2277 species: Archae - 193; Bacteria - 5396; Metazoa - 127; Fungi - 76; Plants - 77; Viruses - 0; Other Eukaryotes - 1358 (source: NCBI BLink).
Link
InterPro Scan - TAIR