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13-2254-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9549004 [Map]; Strand: c
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-2254-1 - 3-prime edge 
    TTTTAGTTTA CGAGGCAAGT AAACGAGGCC GTTAGGTGTA TGCAACCTGG 
    TTTCACTCTT TTGCCACCAG GAATGATCAT GAATTTCTAG ATATTGGAGA 
    TTAAGCATGC CTTCGAACGA GTTTTCATCT ATTGAAATAA ATGGCTTCTT 
    GATTTGTGAC AGTGATGACA CGTTGAAACA TATTCCGAGC AAATGGTGTG 
    TGCCCTGCAA AATAAATATC CGAAGAGAAC TAGTGTTATC TTTAACAAAG 
    GGAACAAATT AATTGTTTGT TTCTTTTTCT TTTAACATCA AAAACCCCAC 
    ACTTTATTAA GCAGGAGGGA AATAATCATA AAAGTTTATC GGTAAATTAA 
    TATGAAGTCA TGCATTAAAA GCGGCTGCGA AAAACTTACT GTTTTATCGG 
    TAAACACATC TAGAATTTCC TCAGCATCCT TCAGAAATCG ACGTTCTCCA 
    GGATTACCCT TGGACTCTGC ACGATCAATT TCTGTACCCA ACTTCTGTAG 
    CAAATTGTGC ATCTCTACGA ATT

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR