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13-2278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10531130 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2278-1 - 5-prime edge 
    ACCGAAGCAG AGAGAGAAAG CGGAAACCAG GAGATAGTTG ATTCGATTTT 
    GATGCGGTTT GACGTGGTTA GACGGTGGCT ATGCCAACTA AACTACCGGA 
    AAGACAAGAT CCTTATAACA GAATCAACTA ATTGCATGAA TTTGGGGGTC 
    CAGACACACA TGATGAGGAG AATTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10531199 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2278-1 - 3-prime edge 
    ATTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    TCGGTTATCC TTGAATCAAA ATCCGGACAA GATATAACCA TTTTGCTATT 
    AGGATCATCT GCTATTGGCT TCTTTGGCTT TCTCGACCTG TTTTTTAAAC 
    CCTTTGATCG GCCACATCTT CGTTTTCCTG GACCACTACT AGGACCAGCA 
    CTCGCATCAG TAGAGTTGTT GTCATATGCT TTTGGCTTCT TTGGCTTTCT 
    CGGCCCGTTT TTCGAACCCT TTGATCGGCA ACATCCTCGT TTTCCTGGGC 
    CAGTACTAGG ACCAACACTC ACATCATTAG AGTTGTTGTT GACGTCTTCA 
    AATGGTCTAA AGGCTTGTGG TGTTGATGTC TCGAGGGTTT CGTCACTAAC 
    ATCCTTAGAT AGTTCTCGGT TGATTGG

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR