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13-2292-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 65848 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 369; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 3425; Region: intergenic
    Flanking Genome Sequence: 13-2292-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC CAAATTGGTA AGTAAAGATT TTGCTTCATG ACTTTTCTTG
    TGGTCGGATT AACATACTCT CAGGAGAATA ATTGTGATCT GTTTTGTTGT
    TGCAGACTCA TGGTCTTGCT GAGTACATAG CTCAAGTGAG AAACTTTTCC
    CTGAAAACTT CCCCATTTTG TTTGTTTAAT ATTAACAAAT TGATTGTACG
    TTTTCAATGT CTCTAGTCCT CTCTTGATTG ATTGTACATT TTCAATGTTT
    TGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 65856 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 377; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 3417; Region: intergenic
    Flanking Genome Sequence: 13-2292-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAAACACATA GAAGCCTAAT ATAGATAGAT ATCATATCAC TCACCCTAAC
    ATAAAGAAAA CATATAAAAC TTGTCTATTT AGCTGATTAA ACAATCAATC
    GGCTTCTCTT ACACAACATG TTGTTAATCT TTGCTTTAAA CTTAACTATG
    TCTTCTATTC TAACCCCACT CTTACATCTT TTCTAATGAT CGTCATTAGC
    CCGAAGATTT ATGAAACATT CATATACTAC TTATAACAAA GGAGGAGTTA
    TATATCTACG TGTCTATAAA AACATACTTT CTTTGGTACA TCTTTTCTTT
    TTAAGAAAAA AGTTATTGAA GATC

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR