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13-2303-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20518204 [Map]; Strand: c
      • AT1G55010.1 - [+] show detail - plant defensin 1.5
        Distance: 801; Region: intergenic
      • AT1G55020.1 - [+] show detail - lipoxygenase 1
        Distance: -7504; Region: intergenic
    Flanking Genome Sequence: 13-2303-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGACT ACACGAAATG AATACATCTT TATTAGCGCA 
    GCCAGTCAAA TATATATTAA CAACATCATT TTTCTTACTA TCGTGTTAGC 
    GTACCAAAGT TTTTTTTTAT TAAATATTTA TACATGAAGT ATTTTACTAG 
    TAACTAATGT CGGGACTTGT TTTTCTAACA AAGNGGTTTT GACCACTTTT 
    CTAATAAATT TTTCGACAAA AACATTTATC GGAATAAATA GGTATGAGAA 
    AATCGTTGCT GTGAGCACAT GAATTAAATT TAGGATTTGA GTGGGATATG 
    AACTTATAAC CCATATAATT AGTCTTGTTT TTCAAAAATT ATTAAAATAA 
    AAAATTTCGA TAATTTCTGA GTATTGTAAC AATAAAATCA ATTGACGACA 
    TGCAATTAAT ATTGGAATCG TTTTTGACGT CTACGTGANA ATTAAGTCTC 
    ATAATTGTGT CATTAAGGGG ATATTCTCCT CTTTAAAGGT TATGAAGTTT 
    GGGCATTGGG GCTATAAAGC CATGGCCATT GTCTCTCATT CTAAACATCG 
    AATT

AT1G55010.1

Model type
Protein coding
Short Description
plant defensin 1.5
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
plant defensin 1.5 (PDF1.5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.2 (TAIR:AT5G44420.1); Has 114 Blast hits to 114 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55020.1

Model type
Protein coding
Short Description
lipoxygenase 1
Curator Summary
lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
Computational Description
lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR