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13-2308-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3729096 [Map]; Strand: c
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -930; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2308-1 - 5-prime edge 
    GTTGGGATTA AGATCCGGTC CAGACCACAG AAAAGCCGCA CAAATCTTCT 
    CAATTTCCTT TAAACAACTG TTTGGTAATC GATAAGCAGA TATCCAGAAG 
    TTGGTGATAC NTTACAAGTA CTTGATTTGA TGAGAGTAAG GCGGCCTGCG 
    TACGATAGTG CTCTTGCAGT CCATGAGCTG ATTTTTGATC TAACCTTTTC 
    TTTTTATTAT TCTTCTTATC TTTCTTCTCT TTCTCTTTCT TTGTGTTGAT 
    GATGCAATCA CCACTCGATT CTCTGCCTCC TCCATCAATA ATAGTATTGC 
    CTCTATCTCT CTCTCTGCTG AGCAAATATT TATATCTCAA AGGGATAAAA 
    GGAACAAAAT CAAGCATTTA AGGGGGTGTA TTCAATCTTA TATTTTGAGT 
    GATTTGAGGT AAATTGAGTT TTTCTATGTT TTTATGATTT TGGGTGGATT 
    TAAGGAAACC ATTCAAAACC ACAATGCCAC CTAAAGCCAT AAGATTTAAA 
    AATCTCTTAC AATCATTATA AATCTAATCC TTAAGTTTTC AAGGACATGA 
    AAATTTTGAG TAGATTTTCA AGCT

AT1G11145.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR