1. Home
  2. Mutant Lines
  3. 13-2338-1

13-2338-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6687173 [Map]; Strand: c
      • AT5G19780.1 - [+] show detail - tubulin alpha-5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-2338-1 - 3-prime edge 
    CTCTCACCGC CTTCATTTCC TCGATCTCCG TCTTCCTCCT TCTCCGTCTG 
    TCGCAGAGCA TCGCTCGAAT TAGGGTTTCT GCTGAGAGAA GATGAGGGAA 
    ATCATTAGCA TTCATATCGG ACAAGCCGGG ATC

AT5G19780.1

Model type
Protein coding
Short Description
tubulin alpha-5
Curator Summary
Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.
Computational Description
tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR