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13-2361-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22171149 [Map]; Strand: c
      • AT1G60110.1 - [+] show detail - Mannose-binding lectin superfamily protein
        Distance: 500; Region: intergenic
      • AT1G60120.1 - [+] show detail - transposable element gene
        Distance: 484; Region: intergenic
    Flanking Genome Sequence: 13-2361-1 - 5-prime edge 
    CCCTCAGTAT ATAACAAGTG GTATTTAGAG TGTTTGGTTA AATACACGAC 
    AGCGAATACT CAAATCTAGT AACACTTTCA GTTCTTCCTC GCGAATGAGG 
    AACGTAAAAG CAACTTTTTT CTTATCAGCG ACGAAAGTAA TGCTGAGGTA 
    TGCAATTAAA GGCTGACATG ACTTCAAAAC TGCCGCATTT TAAGGCGTAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22185184 [Map]; Strand: w
      • AT1G60150.1 - [+] show detail - transposable element gene
        Distance: -2041; Region: intergenic
      • AT1G60160.1 - [+] show detail - Potassium transporter family protein
        Distance: 2930; Region: intergenic
    Flanking Genome Sequence: 13-2361-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    AATCCACCAA AAATAATTTA TCATACTCTA ATAATGTCTA CCAGTTATAT 
    CCGTAAATAT TGAACGACAA TTTCTAATTA TTTTATAACT GCAAACAATT 
    AATTTTTTTG TTAAATAGCT AATATAATTA ACAAAAAAAT TAAGATAGTT 
    GGTTGCCTTG CATTGATAGT AACTTGACAG TAATCCTCTA AATTAAGGTA 
    TTCGCATAAT AATTATCTTT ACGTTTAAAA TAGAGCCTAT AAAAAAAGTA 
    GAAACTTTGA AGAAATGAAA AAAAAATGCC CAATNGGTCA ACTCAGTTAG 
    GTTTATGGAA TATTTCGTCG GNGANAANAT GAGGATCAGG CCATTAANAG 
    NGNGGGTCCC ACCTTATGAG CTAAAACCGA AAAACGCGGC GAAGNGGATA 
    ANCCAGNGGG ACCCATACCG TCGTCACAGC ACCACAAGCC ACCAACGCAT 
    GTTTTTTGTC TATTCACGTA CCCCGNGGCG ACCACATGCC CAAAACATAG 
    TATATTTTTT TTTTTNGNNN TTTAAACCCC NCAAAANTTC NACCNTAANC 
    TTGGNAACCC NTAACCCCTN CACAAATTTN TTTTTNTCCT TTTNGNCCTA 
    AAANCNCCCA NCNTTTGAAA TTTNTGGCCA CCATTGGNCC TTAACCCCTT 
    TTGGGGANNA TTTCNTNCCA ANNCCNTATT NGGGGNTTCT TTTAAACNTT 
    TACAAAANTA TTTTTTNNGG AAAAAANANC CNCTTT

AT1G60110.1

Model type
Protein coding
Short Description
Mannose-binding lectin superfamily protein
Computational Description
Mannose-binding lectin superfamily protein; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G60130.1); Has 2034 Blast hits to 667 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2032; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 3.3e-38 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi)
Link
InterPro Scan - TAIR

AT1G60150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 28% identity and 3.6e-07 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT1G60160.1

Model type
Protein coding
Short Description
Potassium transporter family protein
Computational Description
Potassium transporter family protein; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: K+ uptake permease 7 (TAIR:AT5G09400.1); Has 3447 Blast hits to 3411 proteins in 1044 species: Archae - 13; Bacteria - 2434; Metazoa - 1; Fungi - 101; Plants - 776; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR