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13-2376-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2945212 [Map]; Strand: c
      • AT1G09140.1 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: exon4 (CDS)
      • AT1G09140.2 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-2376-1 - 5-prime edge 
    GTCGTAGATT TTCACCATCA GTTGATAGGT ACAGCAGCAG CTACAGTGCG 
    AGCCGTGCAC CTTCAAGACG CTCTGACTAT CGCGGTTTGT AGAGTCTTCT 
    CGATTGTGTT ATTTGGTGTT GTGTAAAATT TTATATTTGA AAACTCATTT 
    TTACTACCTA AACATGTAGT GCTTGTGACC GGATTACCGC CTTCTGCTTC 
    GTGGCAGGAC CTTAAGGTAA GGGACACTAT ATAGTCTTTT TCTCTGAATG 
    TTGGTTCTCT ATATCATGTT TTGGATTTAT CTCTTTTCTG AAATGATGTT 
    AGTTGCTATT TACGGGTGAT TAGGATCACA TGCGCAAAGC TGGAGATGTC 
    TGCTTCTCTG AAGTTTTCCC TGACCGTAAA GGNGAGTTGA CATTTGATAG 
    TTTGGATAAG NTANCAAACC GGGCCGNNAC CACNCNTGCC CCTATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2945328 [Map]; Strand: c
      • AT1G09140.1 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron3 (CDS)
      • AT1G09140.2 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron3 (CDS)
      • AT1G09150.1 - [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containi...
        Distance: -901; Region: promoter
    Flanking Genome Sequence: 13-2376-1 - 3-prime edge 
    TCTACGACCA CCATGTGCAA TCTCAACCTA AAAACATCAC ACAAAGATAA 
    CACCTTTACA AGAAATTACA GAAAATTAAG CTAGCTTTCA TCATGCGTTT 
    ACTAACCCGA AGTCGACACC CATCAAAATC ATAACCATCA CGTCCATAAA 
    TTGCATCGTC TGCATCACGA GGATCTTCAA ACTGCCACCA ATAACAAACT 
    ATCTTAGTCA TTAGCCTATG CTATTACAAG AAGAAGAAAA AAACAAATTT 
    GTACTTCATC AATATACCTC GACAAAGGCA TAACCAGGAG GTCTCGGTGG 
    AATCTTCAAA TCAATGTCCA CAATTGGTCC ATACTGAAAC AAATATACAT 
    AAGAGTCGAT TTAAATTGTC TCAGCAAGAC AGAATTGCAA ATTTATGAAC 
    CCAAACAAGT CATAATGAAT T

AT1G09140.1

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09140.2

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09150.1

Model type
Protein coding
Short Description
pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
Computational Description
pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR