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13-2399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27421158 [Map]; Strand: c
      • AT1G72860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -380; Region: promoter
      • AT1G72870.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2399-1 - 5-prime edge 
    CAAGGCTGGC AGACGGTCTT TGTAAGTTCG AATTCGTTTT TGATCCAACG 
    AACGGTAGAG ATGGCTGACG AAAGTCCTAC CTGTGTCCTC CCTTCTAAAA 
    CTCAGGAACA CAGAGGAAGA AGAATTCATG ATTTACNTGA TGCCTGAATT 
    TGACCTAAGA AATGCGATGG ATTAGTCAAT GGTGCAGTAT TTCTATAGCG 
    ATTATCTTAC AAAAGTCAAC GGATTAAAAA CGAATATTGA CGACGTGCAA 
    CTGTGTCACA ACATGGATTC TTCTTCCTAT TGGACCATGA ATTTGATATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27417675 [Map]; Strand: w
      • AT1G72860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
      • AT1G72855.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 13-2399-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TAGATTTTGT 
    AACTGCAGCA GACTTAAAGC ATTGCCAGAA CTAGTTCAAT TGGAGAGAAT 
    CAAACTATCT GGCTGTATGA ATCTCCAATC ATTGTTCAAC ATATCTCATG 
    CTGAACAAGA TTGGGGTAGA TTTCGATTGC TTGAGCTTTG GGTTGAAGAC 
    TGCAAGAAAA TTCAAGCAGT TTCAAATCAG CTTGGACATT TTACCGGGCT 
    ATCATATTTA GATC

AT1G72855.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G72860
Link
InterPro Scan - TAIR

AT1G72860.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 17128 Blast hits to 12682 proteins in 562 species: Archae - 4; Bacteria - 839; Metazoa - 1175; Fungi - 47; Plants - 14820; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72870.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS class)
Computational Description
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class) (TAIR:AT5G48780.2); Has 7950 Blast hits to 7386 proteins in 227 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 7937; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR