1. Home
  2. Mutant Lines
  3. 13-2440-1

13-2440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8862506 [Map]; Strand: w
      • AT5G25460.1 - [+] show detail - Protein of unknown function, DUF642
        Distance: -857; Region: promoter
    Flanking Genome Sequence: 13-2440-1 - 5-prime edge 
    GCNAGAANAC AANANACTTA GNCCGGCCGT NCACAAGGAN NACANTTGNG 
    GGTGTAACAC ATGCCACGAT AAACGATTCT CCTAGTAATA GTATCTGTCC 
    ACCGATGATC TAAACCGACC AATTTGGCAT TTCCCAGTTA CTATCATAAT 
    TAATCATATT TGTCACGTAG ATTCAGATGT AAGATTACTA AAAAACATCT 
    CAATTATTTT CACAATCTTA GACTTAAGTG TTTATAGCAT GTGGATAAGG 
    GATCATGATC ATAAGTTTAT AGTTATGTTT AGTGTTTTGT TTTTGGTAGT 
    TTTAGTTTCA GGCGGTTTTG AAACACTTTT TCCGATCCGA CCTATACTCA 
    TTTTATTTTT TTTGTTTTAT TTACAATTTA ATTTACAGAT TAGACATTAA 
    CACATATTTT CAATTTCTCA AAATTATCCA AAATATTCAT ATCTTAAAGA 
    TGTGAAAATT TATCANAATT AGTGAATT

AT5G25460.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF642
Computational Description
Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR