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13-2451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3432014 [Map]; Strand: w
      • AT3G10960.1 - [+] show detail - AZA-guanine resistant1
        Distance: -5017; Region: intergenic
      • AT3G10970.2 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 1059; Region: intergenic
    Flanking Genome Sequence: 13-2451-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTGAG GACTTGGATA CTAATATTCA CAAATAATTT 
    TCTTTATCAT ATGGAATATT TGTTTCTAAT CAGTGGATCA CTTTAGGGTG 
    AGGAACGAAG TTAACTTGTC AAAAAGTTGC CATGACACCG AGGCTTTTAC 
    AATTTTGTAC AAAACTAAGG TGGCCTAATT CGAATTAGTT TAACAAAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3389392 [Map]; Strand: w
      • AT3G10820.1 - [+] show detail - Transcription elongation factor (TFIIS) family protein
        Distance: 0; Region: intron8 (3UTR)
      • AT3G10820.2 - [+] show detail - Transcription elongation factor (TFIIS) family protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 13-2451-1 - 3-prime edge 
    GTTTCCAGTA CTTGTATCGT CCTCTGTCTC TTAGCTGTTC AAAAACAAAT 
    GGGTCATTAA GAATTAGGTG TATTGTAATA GTGGAAATAT TGAAATCTCT 
    TAAGACGATT TGACTAACCA TTCTCATGTT GGTGGTAGCT CTCTTGGAGT 
    TTCCGCTTTG CAAACTCAAA CTTTGAGTCT GGATC

AT3G10820.1

Model type
Protein coding
Short Description
Transcription elongation factor (TFIIS) family protein
Computational Description
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10820.2

Model type
Protein coding
Short Description
Transcription elongation factor (TFIIS) family protein
Computational Description
Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1).
Link
InterPro Scan - TAIR

AT3G10960.1

Model type
Protein coding
Short Description
AZA-guanine resistant1
Curator Summary
Encodes a homolog of the adenine-guanine-hypoxanthine transporter AzgA of Aspergillus nidulans. Function as a plant adenine-guanine transporter. Two closely related genes exist in Arabidopsis: AT3G10960 (Azg1) and AT5G50300 (Azg2).
Computational Description
AZA-guanine resistant1 (AZG1); FUNCTIONS IN: transmembrane transporter activity, purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G50300.1); Has 8325 Blast hits to 8321 proteins in 1933 species: Archae - 105; Bacteria - 6300; Metazoa - 12; Fungi - 117; Plants - 83; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10970.2

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR