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13-2457-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26165683 [Map]; Strand: c
      • AT1G69572.1 - [+] show detail - other RNA
        Distance: 2922; Region: intergenic
      • AT1G69580.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -6260; Region: intergenic
    Flanking Genome Sequence: 13-2457-1 - 5-prime edge 
    AAAGTGACAT CATTCATGTG TCACTTGGAG ACAATAATTA TATGAAAGTC 
    TTACAAGTTA TTAGGGAAGG TAATTCAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20846030 [Map]; Strand: w
      • AT1G55750.1 - [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and ...
        Distance: -848; Region: promoter
    Flanking Genome Sequence: 13-2457-1 - 3-prime edge 
    GTTCTTCATA AGATGCTGGA AAATGAAGAT TTTTTTTCAA TTATTTGTTC 
    CCGGCAAACG AACTACGTCA ATAATGGGCC TTATTAGTGG CCCAAAATAT 
    TAAAGACGTC GTTTCATTCT GTAATAAATA GATCCCTAAT CAAAAAAACC 
    TCCCAAATTT CGAACTCAAA ACTCTTTCTA CGTCTACCTT CTTCTTCTTC 
    AGCCGTCGAC ATCCTCTAGT AAGCCAGCTA CTCTTTTCTT CTTCTGTACA 
    GTAATCAGCT TCAATTCTAT AGAGCTTTCA AAAAAAATCT ATCGTTTGAA 
    GCT

AT1G55750.1

Model type
Protein coding
Short Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Computational Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69572.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G69570
Link
InterPro Scan - TAIR

AT1G69580.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR