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13-2480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3830877 [Map]; Strand: c
      • AT1G11370.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-2480-1 - 5-prime edge
    CTTATGGCGA TGACCAGTAC CATGCAGCTC TTCGTATTGA GTTTTCTCGT 
    AATAGCCTCA CTGTTTCTTG GGGCAACAGG TGGCTCCTCC AGCAAGTTTG
    ATCTCCACGC CCGATCAGGT AACTAGGAAA ACCTTTATTT TGTTTGTGTG
    TCCGCTAATC GATTTTTTTT TGTTTTGTAT CCGCNAATCC AACTTTTAGG
    CTCTCTAGCG TTTATAACTA ATAAAGTTCC AGCTTTGAAA ACAGAAATCG
    ATTANAAAAT GAAAAACTTA TGGACAACAA ATCAACAATG GGAAATGATC
    AAAATAATCC CCAACTTTNT NTAATTAGCA NAAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3830993 [Map]; Strand: c
      • AT1G11370.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -48; Region: promoter
    Flanking Genome Sequence: 13-2480-1 - 3-prime edge
    GCCATAAGGT CTCTAATTCT CTATCTCTCG AAAATAAAAA TCAGCCGAGG 
    AAGTGTAACT GAAGAAGAGA GAATGAGATG TTGCAGAGTA GAACTTAATT
    TTGTTATGAC TTTTGAGTCT TATAATTACN TTCTCATACA TATAGTTTAT
    A

AT1G11370.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: methylesterase PCR A (TAIR:AT1G11580.1); Has 2636 Blast hits to 2592 proteins in 316 species: Archae - 8; Bacteria - 611; Metazoa - 1; Fungi - 192; Plants - 1799; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR