Home
Mutant Lines
13-2480-1

13-2480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity /structure development stage	Phenotype
vascular leaf (PO:0009025)	abnormal (PATO:0000460) (Leaves::abnormal shape)

Anatomical entity
/structure development stage

Phenotype

vascular leaf (PO:0009025)

abnormal (PATO:0000460)
(Leaves::abnormal shape)

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 3830877 [Map]; Strand: c
- AT1G11370.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

CTTATGGCGA TGACCAGTAC CATGCAGCTC TTCGTATTGA GTTTTCTCGT 
AATAGCCTCA CTGTTTCTTG GGGCAACAGG TGGCTCCTCC AGCAAGTTTG 
ATCTCCACGC CCGATCAGGT AACTAGGAAA ACCTTTATTT TGTTTGTGTG 
TCCGCTAATC GATTTTTTTT TGTTTTGTAT CCGCNAATCC AACTTTTAGG 
CTCTCTAGCG TTTATAACTA ATAAAGTTCC AGCTTTGAAA ACAGAAATCG 
ATTANAAAAT GAAAAACTTA TGGACAACAA ATCAACAATG GGAAATGATC 
AAAATAATCC CCAACTTTNT NTAATTAGCA NAAAAGCT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 3830993 [Map]; Strand: c
  - AT1G11370.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: -48; Region: promoter
Flanking Genome Sequence: 13-2480-1 - 3-prime edge
```
GCCATAAGGT CTCTAATTCT CTATCTCTCG AAAATAAAAA TCAGCCGAGG 
AAGTGTAACT GAAGAAGAGA GAATGAGATG TTGCAGAGTA GAACTTAATT 
TTGTTATGAC TTTTGAGTCT TATAATTACN TTCTCATACA TATAGTTTAT 
A
```

AT1G11370.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: methylesterase PCR A (TAIR:AT1G11580.1); Has 2636 Blast hits to 2592 proteins in 316 species: Archae - 8; Bacteria - 611; Metazoa - 1; Fungi - 192; Plants - 1799; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR