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13-2482-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13281430 [Map]; Strand: c
      • AT1G35780.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1141; Region: intergenic
      • AT1G35790.1 - [+] show detail - transposable element gene
        Distance: 13760; Region: intergenic
    Flanking Genome Sequence: 13-2482-1 - 3-prime edge 
    CTCTTTAACC AAATAAACCA AGATCGTAAA NTTAACAGGC GTCAGAGATT 
    TCGTCGAAGA TTGAGAAACC CACTTTAAGA AAATTTGATC CTCTTGCCTC 
    ACTTGGTAAT TAAAAGTCTT CAGAAGAAAA ACCTTGGGAT ACTTTGGATG 
    GCAGATGGTG GAAACTCAGC TAAACATTTA GAAACCGTCG AGAACGCNTG 
    TGGCCGGAGA TATCGACTAT GCGACTTGAA CCGGCAAAAA AAAAAAAAAA 
    AAGGGGGGGG NTNNCCCCCN AAACCCTTTT NGGNAAANNN GGGGGGGNAA 
    CCCCAAANTN GGGNCCCCCC CCCCAANTCC CCNNNNCCCC CCCGGGNANG 
    GGNTNAAACC NNNNNNNNTT GGNCCNGGGG NTTTTTTTNN AAAAAAAAAA 
    NCCCCCCCTT TTNGNAAANN CCCCNGNNAA ANTTTTNNNN NNCCNCCNGG 
    GGNNGGNANC CCCNNGGGCC TATTA

AT1G35780.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G35790.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 1.3e-42 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR