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13-2493-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5580457 [Map]; Strand: w
      • AT1G16310.1 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G16320.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -398; Region: promoter
    Flanking Genome Sequence: 13-2493-1 - 5-prime edge 
    ATGGGNATAC TCTTATGGAN NNGGGCTACT AATNACNNNG ATGGCAATAG 
    NTNATCCCTA NGACNNGANN NTACNAGAGG CTTNACAGNA TCACGAGACA 
    CNGCCCAGGA ANAGCCTCGG AGCANCTNGC TGAAGTANAA CAAGCNTTTT 
    GTCCACATAG ACTTTGAGTT CACTCATCGT CCTGAACACA AGTGTAACTA 
    GATTTTAAGT AGTAATTTGT AGTACTATAA TTAGTTCTTT AGTTTATGTA 
    CTCTTCGTGT CGTTTTTGTC TATATAGATA CTTGAACGTT GTGCCGTCTC 
    TGTTTATCGA ATGCGCATTG TGTGTCGTTT GAAGCTAATC GTCGACATTA 
    ATAGCGTTTC AAACACTAAA CTCAAAATAA AGATAAAATC ATATATAATA 
    AAATAATGAA TTTTAAATGA AAACCACTCA AAATGGTTTT TATCTATCTT 
    CCGACAAAAT TCCGTGCTTC ATTGCTCTTC TCCACAAGAC AACATTTCTC 
    TGGCTCAGAA TCGACGCCAT GGAAATGTAA AGAAGAAACA AAGACGAGCT 
    CTCAAATCCA GCAGCAATGG CTTTTCCTTC TTTCTAATCT ATCATCTCCG 
    TCAATCCATC TTCAACCGGG AAAATACCCC AAACCTTAAA CCCATTTTAA 
    GNCAATCTCT ATCGTCTTCG TCTTCTGTTA GCTACGAATT TGGTNNAAGA 
    GAATCTATTT ACNCTCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5580340 [Map]; Strand: w
      • AT1G16310.1 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G16320.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -515; Region: promoter
    Flanking Genome Sequence: 13-2493-1 - 3-prime edge 
    ACTGTGTCAA TATGCTTAAT TTGTTCGTGA TGGTTCCATA TCAAGAATGT 
    CAGTTTCGCC AAGAAATCTG GTGGCGCAGA GCGGCCGATC AGTGAATGGA 
    CGTTCTCTAG TACGGTTCTT GCCCATGTTG CTATGGTGTA CAAAGCAATC 
    TGCAACCATA AAAAGGAAAA AAAAAACGTT TTANTAATCC NACAAAACNT 
    TTNTTGATCA TTTTAAATTC CTAAGTTAGT TNCTTNCAAG TNTANCCCCG 
    GTNGGATCAA TCCNCCANTA AAATTTGACG GCCAAAACAG CTGTNGCTAA 
    CCCNATNGAA TTANNGACAA CNTCAAAAAG GNGATNTTGA NCNTAGGCCC 
    TANCAATTTC GTTNTNAAAT CCTNTGCANT AAANCNTTAA AAAAANCTTC 
    NCNANGGNGA CANAAACCNT GATNCCAATC ATCCNTTTNT CCTNTGGGCT 
    NTTCATATNA ATNCCNCTNT GTANCAAAAA ACAAAATNGG TTAAATNCNT 
    TANTTANCCG ATGAAAGCAG TTNCCTGAAA ATATGTAAAG TACCTTGGCA 
    ACTAGTNGCC TTCCTGACTN TANCNAAAAC TTGCAGTCCA AGAGTTGCCN 
    TCNCGGAAGC AAACCCAATG ATNCCCTGNA AATTNACNTT ATNAGTTNTT 
    TTTTCTTGNG ANACAAGTAA GTTCCAACAA NGGGGTTNNG NNATCAAACC 
    NNAANAANCN TCCCCCAGGT TGCNTCCN

AT1G16310.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16320.1

Model type
Protein coding
Short Description
Uncharacterized conserved protein (DUF2358)
Computational Description
Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR