1. Home
  2. Mutant Lines
  3. 13-2514-1

13-2514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110173 [Map]; Strand: c
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-2514-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG AATGCGGTTT CCACCATTTG ATGATGAGGA 
    GCCCCCTCTA GACTATGCTG ATAACCTGTT GGACGTTGAT CCTCTAGAGG 
    CAATTCAGTT GGAGCTAGAT GAAGAAGAAG ATTCTGCTGT GTACTCTTGG 
    TTTTACGACC ACAAGCCACT TGTAAAAACA AAAATGATCA ATGGTCCAAG 
    TTACCAGACG TGGAATCTCT CACTTCCAAT TATGTCAACC CTTCACAGGC 
    TTGCAGCCCA GTTGTTGTCT GATTTGGTTG ATCGCAACTA CTTCTACTTG 
    TTTGACATGC CATCATTCTT TACTGCAAAG GCACTGAACA TGTGCATACC 
    AGGTAACGCT ATACTCTATG TTCTCCTGTT CTGATATCTT CGTTTTCACA 
    GTTGTTGTCC TTCTGTTCTC TTTCCCTGAT TCAATTTGGT ACTCTTTTTC 
    AGGCGGTCCT AAGTTTGAGC CTTTGCATCG TGATATGGAG AAAGGAGATG 
    AAGACTGGAA TGAATTTAAT GACATCAACA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110232 [Map]; Strand: c
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-2514-1 - 3-prime edge 
    TTTATGACGA CGATCCCTCT TCTCCCTTCT CATCATTATC CACATAGAAC 
    CCCACTGCAA ACGAAAGAAT CATCACTAGA AAACATGTCT CACAAATTCA 
    CAAATGCACA GACACAAAAG AAGAGAGAGG GAGATTATTC ACCCACCTGA 
    GCCATGTAAA TAGGTTCCAC AACCCATCGT ACTTCGTTCA CAAATGTAAT 
    AGCTCCAGTG ATGTGGTACA AGACCTTCAC GTCCCGGACC TGGAAAATAT 
    CTGAGTTCAA AATTTTGAGC AGAGCAGGAG AACAACTAAA GCGAGATATA 
    GATCACTAAG TGAATAATTA CCTGTTCCCA GGGCATAGGC ATATTCTCCA 
    GGAGCTTGAA AACTGCGTGA GGAACGAACT TAAGTGCTCC AAGATATACA 
    CGTTTATCAA GTCGATGTTT CTTTGATGAC ATATCACCAT GATCCCTGAA 
    TCAAAACGCA GAGTCAGTTT CAATCTAACT TAACCCAAAC CTAATAATAC 
    AAAGAAATTG GACCAGATTC GTTTCCCAGT CAACTGGATT TCGAAATCGA 
    AATTGAAAAA TTAGAAACTC GCCTGATGAT TTTCCTAACG TGCTCAGGTG 
    GCATGTCCTN CTTCTGAGTT TCCACGAACC CAAACTTCCT CTTGTCGCCG 
    TACCGTTTGG AATTTAGCTG CATNCATGTT CTCGCCTTNT TNTNAGCTAC 
    NNCCCGGGCC GTNGACCCCN GGCCCNNNNA N

AT4G38780.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Computational Description
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR