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13-2559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15673431 [Map]; Strand: w
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2559-1 - 5-prime edge 
    CGTCTAGTAG TTCAAGGAAA CAAACAAGTT GAAGGAGAAG ATTACAAATA 
    AACTTTTGCA CCATTTGTGC GAATGACTAC GGTTCGTACT TTTCTTTGTT 
    TTGCTGCTGC AAATCAATGG AAGGTTTATA AGATGGATGT TCATAACGCT 
    TCTTTATGGT GACCTTGAGG AGGAAGTCTA CATGAAGCTC CCTCCTGGGT 
    TTCGTCACTC TCATCCCGAC AAAGTTTGTC GTCTTCGTAC GTCATTGTAC 
    GGCTTGAAAT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15673315 [Map]; Strand: w
      • AT3G43825.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2559-1 - 3-prime edge 
    ACTAGACGAG CTTTGTATCA TTCCACTGTT CCGTCGACAT TATACTTAGT 
    CTTATAGACC CATTGACTTC TAATAGCGAC TTTCCTAGCG GCAAATCGAC 
    AATATCCTAT GTCTTATTAA TCTCTAGAGC ATCAATCTCC TTAAACATTT 
    CATCATTCCA AACCTTGATC TGAACAACTT CTTTAAAATG TTTAGGTTCG 
    ACGTTAGTCG TGATGGCAGG GAGAAAAGCT

AT3G43825.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.3e-106 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR