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13-2569-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10972 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -608; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -517; Region: promoter
    Flanking Genome Sequence: 13-2569-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGTTTATAG AGCATCATCC ACTCTCCTCG ACGAGCAAGA TCATGCCGCC 
    TCTGGATTCT TCTCATTCAT CGGTGTTCCT GCGATCCCCT CCGTAGCACC 
    CTCCGCCTCC TCAGCGCCTT CCCCGTGTAA ATTACCGTTC TGCATGTTTA 
    GAAATTTGAC GTGGAAATTG TTGCAATGTA ACTTTCTGTG ATACTTGGCT 
    ATTGTTGCAA TGTAATTTTC ATTGAAGTCA GTCACCAATG ACCATTGAAC 
    AGATGTTTTA AAATGTCCAC GTAAGCAATT GTTGTTTGGA ACGATTTTCG 
    GTTAGCATTC GTGCCTTTTT TACCTCAATA AAAGGCCGTG GCATTAACTC 
    ACTTGTCTTG AGACGTTATG TCGTTAAAAC CAAGCCCAAA GTTAATTTCG 
    GCCCAAATCG TTTTCAACTT TCCCGCCGTC TTTTAACTTT TTAGTTTTTT 
    GGTGATGGTT TTGGGGGGAA AGAAAACAGA AAATATAAAA ATAAAATTTC 
    CGCACTCCCG ACTCTTGGTG TGGTAGGCAA TTCTGAATCG CGAGGTTTAG 
    TTCTCCGGCT GAATCAGAGA ACGACGAGTC GGAAAAATTC GAAACTCTAG 
    AACTGAATAA ATGTCGACGT GGCAATTATT TNCCGATTCC AGCGGCGATG 
    GTTTNCCGGN GGGAAGTCGC TGGCCNGATT CTTCAGTCCG TCTCGGATTC 
    TACGCCAACC AAGGCGCTCG AATNGACAGC TCCTTTACCT TNTATGGGCC 
    G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10988 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -624; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -533; Region: promoter
    Flanking Genome Sequence: 13-2569-1 - 5-prime edge 
    CGGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCNNC AACAATATGG TCGACGTACA CCTAAAATGT CTTGCTACGT 
    GGATGCACCA CTAAACCTTT CAACTTTTTT GTGTTTTCTT TTCTTAATTA 
    AACACAAGAT TAATTAGGAA ATTTTGTGTT TCGTTCCGTT TCGTTTCGAT 
    TTCTGGTTTC TTGTTTCTAT TACTCAAATT ATTGCTCGAG TGTTAGGTTT 
    GCTTGTATCT ATCCTTGTTT TTTCCGTGAT TATGTAATTT GATTGGCCCT 
    TGTAGTCGAG ATGTTTGTAG CCTTGATGGC TCGGGGAAAC TCAGAGAGAG 
    AGTTGGTCCC GGTTGCATTC TCCGCTGTCT TACTGATACC ATAAACACCG 
    TTTGATCCAT GATTGCCTCT ATTGTATACT TGATGCTTCA TGATATATGC 
    ATTCTCCATG TCTCTGTTTC ATGTTTACGC ATAAAAATAT TATCAAGCCT 
    CAAACTTGAA TT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR