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13-2595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1009064 [Map]; Strand: c
      • AT4G02290.1 - [+] show detail - glycosyl hydrolase 9B13
        Distance: -3811; Region: intergenic
      • AT4G02300.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 302; Region: intergenic
    Flanking Genome Sequence: 13-2595-1 - 5-prime edge 
    TTGGNNATAT TNCNAAGGNC GAGGGCATNN ATANAAGGGA NAGCAATACN 
    ATCATCTNAT TAAACATCCA AGGCATCTGT GAGAGGAGAT AGGATCACAC 
    AAACCCNGNN NGANAACCNN ACGTGNCCAT ACTTAGGGTA AATGAAAAAA 
    ATTATNTNAC GAATTTGGTC AAAGAAACTT ATTTATTTGT CCACATGTGT 
    AATTTAATAT TTCCGATGAA ATTTGTAGCC TTTACCATCT GTTTTCTAGG 
    TTGTTCAATA ATGGAAAGAC TTTTACAGTG AAGCAGAAAA AGGAGAATAA 
    GAACATGAAT CCAAAGTTTG GTTTTTATAT TTTTCCTCTT TATATCGTGT 
    TGTTTTGTTT TGGAGGGTCA TAATGCATGT GGAGTCNTCN CAGAAGCGCN 
    CATGATNAGT NCGACATTCC CATCCTCTCC ATTNTTATTA TTCAACGCCN 
    CNCTTTNTNC NTNTTCNTNT NCNCNNNCNT ACCANCCNGG GCCGNNNNCC 
    NNCNNNCCCN NNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 246685 [Map]; Strand: w
      • AT4G00570.1 - [+] show detail - NAD-dependent malic enzyme 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-2595-1 - 3-prime edge 
    CACAGCTTCT TCTACTGGAG AAGAGGAGGA GAACACAAAT CCAATTCACA 
    CTGGAAACGT AAGAAGAAGC GATCAAAGCT

AT4G00570.1

Model type
Protein coding
Short Description
NAD-dependent malic enzyme 2
Curator Summary
Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the beta family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the alpha-type NAD-ME2 (At2g13560). NAD-ME2 transcript and protein levels are higher during the night than during the day.
Computational Description
NAD-dependent malic enzyme 2 (NAD-ME2); FUNCTIONS IN: in 7 functions; INVOLVED IN: malate metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD-dependent malic enzyme 1 (TAIR:AT2G13560.1); Has 9343 Blast hits to 9326 proteins in 2439 species: Archae - 143; Bacteria - 6323; Metazoa - 607; Fungi - 223; Plants - 463; Viruses - 0; Other Eukaryotes - 1584 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02290.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B13
Computational Description
glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02300.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower, cultured cell; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02320.1); Has 2686 Blast hits to 2624 proteins in 317 species: Archae - 6; Bacteria - 574; Metazoa - 1; Fungi - 202; Plants - 1878; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR