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Mutant Lines
13-2622-1

13-2622-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 25264111 [Map]; Strand: c
- AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
  Distance: -210; Region: promoter
- AT5G62950.1 - [+] show detail - RNA polymerase II, Rpb4, core protein
  Distance: -244; Region: promoter
- AT5G62950.2 - [+] show detail - RNA polymerase II, Rpb4, core protein
  Distance: -244; Region: promoter

TCTAGGGTTT TACTTTTGAC AATAACGACG TCGTTCTACC GATTCATTCA 
CCGCCACCGT CTGGAGCAAA TCGTGGTCTC AATCTCCGTC TGAATCATAC 
CTCGAAGGAG CTCCTCTAAT TAGGGATGTT AATATGGGCN TTATAATTTA 
GGGCCGGCCC GAGTCTGTTA AAAGATATAA GCCCTAACCC TAATAAAAGA 
TTTTAGGTTA AGATAGGGCT ATACTTAAAT TGTTACGGGC TAAAATAGGG 
TTGGCCCTAT TACACTTTTT TAATTATTCT TTATTCCATT TTTTTTATCT 
TTCTTTCTTC TTCTTTCTCC CAAACGCTCT TCTTCTTCGA TCTCTTTTTT 
TTTTTTTTAA AANCCNNTTN NANCCCNNAA AAGNGNAAAA ANNACNNCCC 
GGGGCNGGNA NCCCCCCNNN CCNTTNNA

AT5G62950.1

Model type: Protein coding
Short Description: RNA polymerase II, Rpb4, core protein
Computational Description: RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 38; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G62950.2

Model type: Protein coding
Short Description: RNA polymerase II, Rpb4, core protein
Computational Description: RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G62950.3

Model type: Protein coding
Short Description: RNA polymerase II, Rpb4, core protein
Computational Description: RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
Link: InterPro Scan - TAIR