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13-2669-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3526216 [Map]; Strand: w
      • AT5G11090.1 - [+] show detail - serine-rich protein-related
        Distance: 370; Region: intergenic
      • AT5G11100.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -6186; Region: intergenic
    Flanking Genome Sequence: 13-2669-1 - 5-prime edge 
    CTAACAGGGA CATGAAAATT CAGATGGAAT TGAGAGATAA ACAAAATAAA 
    TTAGTAGAAA AATACATTAA AAACAAAAAC AAAAGAGGTG GAAAAGGTCT 
    TCACTTTCTG GACATATAAA AAAAAAACCN CCAAAAANTN TTNGGGGGGA 
    AAANCNTNNC CNGAAANCAA ANTTTCCTTN GGNGGGAAAG GGAAAAAANG 
    NNTTTGGGNA AAAAAAANAC CNGNCNGCCC CATTTAAAAA ANNCCCGGAC 
    CNTTNGGANT TTTTTGGGGN CCNANNGGAA AAAAANCCTT TNNANTTTTT 
    TTTNANGGGA NTGGGNANTN TTTNGNNTNC NTNANGGNNN AAANCTNGNA 
    NNNTTNNAAA AAAAAAAAAA GNANGGCTTT AANNGGGNAA AANCCCNTTT 
    TNCNGNTNNG NAAAATTTNG TTNTTTNCAA NNNTNTNCCN NNGNGCCCNN 
    NANNNNCTTT TTNAAAAAAN TTTNNAANAA NTNNAAAAAA NNTTTTTNNA 
    NTTTNTNAAN NAANGTTNGN NNTTTNAAGT TNAAAAAANN NAACCNNNTC 
    NAAAANCTAA ANCNGNNTAA NCTTGNCAAN AAANNANNAN CCCCCNCTTN 
    GNANTNNNNN GNCCGGGNAT AANTTAAGGT TNTTTNGTNT AATTNAAAAG 
    GGTTTNTTTT TGNNAAAACT TAAAAAAATC NGGNNTTNGG ATAAANAAAA 
    GGNGTGGG

AT5G11090.1

Model type
Protein coding
Short Description
serine-rich protein-related
Computational Description
serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11100.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR