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13-2671-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4946826 [Map]; Strand: c
      • AT1G14450.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: 0; Region: intron1 (3UTR)
    Flanking Genome Sequence: 13-2671-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGATANC TNTTAAAATG 
    CCTGAANGAA TCAANGGTCT TGATCAAATT ACATGCTTCT CACCCCAAGT 
    TTAATCCTCT ATTCAAATGA TTTTGTAACT CTGGTATGTA GCGTATAGAT 
    AGTGGAGAAT GTGGCTACTA CATGCATTTT TTTTCGGTTT ATATAAGCAA 
    AGCNTGAAGG AAAATTTAGA ATAACGCATA GGAGCTAAGG TTGAGTAGAA 
    GATCAGAACT ATTCAAAGTA ACTAAAAATT TTAAGGGCAT AGGCATTTGT 
    TGTCTAAAAA CTAGTCGGTT GCGATCCCTC GCCTCTGCGT ATGTTCTAAA 
    GTGTAGGGTT TTTTTTGTAT CATAATCTCT TACAANAAAA TATTTGTTGT 
    ATGATTGCAN ATGCTTGAAA CAGTGGCACA AGGCTGAACT CAGGGTCTCT 
    TCTTGGTTAC TAGTTTTCGT TGGATTGTCT TAATAATCAT GTTTAAATCG 
    AATACAAAGA ATTTGATATC TATATTTGAA CTGTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4933353 [Map]; Strand: w
      • AT1G14420.1 - [+] show detail - Pectate lyase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G14430.1 - [+] show detail - glyoxal oxidase-related protein
        Distance: -767; Region: promoter
    Flanking Genome Sequence: 13-2671-1 - 3-prime edge 
    ATGGCAGCAG CTTTCTTGAA TCTTGGCGGC TATGTTTTCG TTTTCTTCTC 
    TTCGTTCTTA GCTATAGTGG CCCCACAGGT TCGAGGCAAT GTTGCTGTCT 
    TTGATAGCTA CTGGACGCAA CGACAAAGTG ATGCATTGAA ACAAACCATC 
    GGCTCTTACG ATCCTCATCC ACTTAACGTC ACCAACCATT TTAATTACCA 
    TGTCAATATG TGAGTTTTTG TCTTTGTTAG GTCAAATGTT TAACCTAACT 
    TCCTAAACAA GTACTAATTA AACACTTTTT TTTTTTTTAA ANAAACCNGG 
    GGNNNCNTGG NANNNAGGGA NCAANCCNGG GNNANNNNTT NNNNGGGGNA 
    AANGGGGNCG AAAANCCCNN AAAACCCGGG NAAAANCCCT NCTTTNNACC 
    CCANAAAAAA ANNGGGGGGA ANNCAANNGA AANGGGGTTA AAACCNGGAA 
    AAAANNACCC ANTNGGNNNN TNNNNTNNGN NNGGAAANCC CCCGNGGAAA 
    AAAAAGGGCC NGTTTTCTTT TNNAAAAAAN CCCNTTTNNA CNNCNATTTT 
    TTANACCNNT TAANCCANGA AACTTAANGG GTGNCNGGGN NTNNAAAAAN 
    GGCCCCTTTT NGAANNATTT TTCCAAAAAA GGTNGNTTTN AAAANGGGCN 
    NNAAAACNGG TTNATCCCCC NCCCCAAAAN CATNNNTGGG AAAANGGCCN 
    NNGGNTTCAN TNNGGGGNNG GGGCNGNAAA AACCNNCCNA TTNGGGAAAA 
    GGGGGNCTTC CCNANTTTTT TNGNCNCCCC T

AT1G14420.1

Model type
Protein coding
Short Description
Pectate lyase family protein
Computational Description
AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14430.1

Model type
Protein coding
Short Description
glyoxal oxidase-related protein
Computational Description
glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT3G57620.1); Has 1265 Blast hits to 1255 proteins in 183 species: Archae - 0; Bacteria - 321; Metazoa - 2; Fungi - 244; Plants - 682; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14450.1

Model type
Protein coding
Short Description
NADH dehydrogenase (ubiquinone)s
Computational Description
NADH dehydrogenase (ubiquinone)s; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, B12 subunit (InterPro:IPR012576); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT2G02510.1); Has 62 Blast hits to 62 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR