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13-2760-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3534674 [Map]; Strand: c
      • AT1G10660.2 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.3 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.4 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10670.3 - [+] show detail - ATP-citrate lyase A-1
        Distance: -709; Region: promoter
      • AT1G10670.4 - [+] show detail - ATP-citrate lyase A-1
        Distance: -709; Region: promoter
      • AT1G10670.1 - [+] show detail - ATP-citrate lyase A-1
        Distance: -713; Region: promoter
      • AT1G10670.2 - [+] show detail - ATP-citrate lyase A-1
        Distance: -891; Region: promoter
    Flanking Genome Sequence: 13-2760-1 - 5-prime edge 
    ACGTTTTNNN CTAACACAAT CGGTTATANN NATAACGGTC GGTACNGGAT 
    TNTCCCATNC TACTTTCATN CAGNNTNAAG ATCACNACAN TCGTCTATTN 
    TNTATCGNNT AAATGGNNAG CTNNTCNTAG GNAACGNTNG ATNTCATAGT 
    ANGTGTGAAG AGTTATNATN ATACCATACG GGGNGCGTAT GGTGACGAAN 
    GATCAAGAAA TNGGTATGGC CACCTGCAAA ACATGTATAA CAAGATCCCT 
    TAAAACTCGT AAAGACACTG CGGCTCTGTT TGTTAAGAAG ATTTTGAGTG 
    GGCCATTTGG CGCAATCAGA AAGTCATAGT ACTTGATCAG TACAATGAGT 
    TAATATCTGG GGTCAAAATG ATGGAAACTT ATGCCTCTAT GAAGATAAGA 
    AAACAGAACA AGTGTGTACC ATAAGTTCTT GACGGCATGG ATTATCCATT 
    GGTAAGCCAC GAAAATACAG CTCCAAAGTA CAAAGTAAGC AATCCGGAAC 
    AGTGGGAATC GCTGGATAAG GAAGAAAGAA GATTGCCATT AGATTCTAAT 
    AAAAAAGGCA GGAGATTGTG TATCCGCAGA CTTCAGTTTT GAAAACTTAC 
    CAAGGAATTG AGGCTTGTGT CACCAAGGAG AAAAACAGCG TTGAGAGAAT 
    GCATACAAAC ATCGAGCTGC AGTCAAAATA ACACATGTAA GGAATAAATA 
    TATTCATTGT CGACTTTTAG TATAGAGACT GCCAGAAAAA AAAGTGATCA 
    TATCAAAGAA ATCCAAATCT TTCTAANAAT GGACTCAAAC NGGTTTAGAG 
    CCAGAACTTA CAAAACTCAG NTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3534669 [Map]; Strand: c
      • AT1G10660.2 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.3 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10660.4 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant stru...
        Distance: 0; Region: intron8 (CDS)
      • AT1G10670.3 - [+] show detail - ATP-citrate lyase A-1
        Distance: -714; Region: promoter
      • AT1G10670.4 - [+] show detail - ATP-citrate lyase A-1
        Distance: -714; Region: promoter
      • AT1G10670.1 - [+] show detail - ATP-citrate lyase A-1
        Distance: -718; Region: promoter
      • AT1G10670.2 - [+] show detail - ATP-citrate lyase A-1
        Distance: -896; Region: promoter
    Flanking Genome Sequence: 13-2760-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TTTATGTTTC TGCAGGTACT TGGGAGTGGC TGTGATGCAT ATACCATGCT 
    TTGCGGTCTT CGCTTTGGTC ATAAAGCTGA AGAATTACTT GCTGCAGCAG 
    CGTCACAACT CGTGATAGTT TTGGTCTCCC CGAATT

AT1G10660.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10660.2

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10660.3

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10660.4

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10670.1

Model type
Protein coding
Short Description
ATP-citrate lyase A-1
Curator Summary
One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.
Computational Description
ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1); Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120; Bacteria - 3046; Metazoa - 362; Fungi - 200; Plants - 107; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10670.2

Model type
Protein coding
Short Description
ATP-citrate lyase A-1
Curator Summary
One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.
Computational Description
ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1); Has 5465 Blast hits to 5464 proteins in 1555 species: Archae - 120; Bacteria - 3046; Metazoa - 362; Fungi - 200; Plants - 107; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10670.3

Model type
Protein coding
Short Description
ATP-citrate lyase A-1
Curator Summary
One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.
Computational Description
ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1).
Link
InterPro Scan - TAIR

AT1G10670.4

Model type
Protein coding
Short Description
ATP-citrate lyase A-1
Curator Summary
One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.
Computational Description
ATP-citrate lyase A-1 (ACLA-1); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-2 (TAIR:AT1G60810.1).
Link
InterPro Scan - TAIR