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13-2768-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23371807 [Map]; Strand: w
      • AT1G63040.1 - [+] show detail - pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thal...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2768-1 - 3-prime edge 
    GCTCCAGCCG CACCCCTAGT CGCTGCAGCC GCGGCTGCAG CGCATCTGAT 
    ATGAGCTGCG GAAGAGGAAA GGGGAATGGG GTAAGATCCC AGGGAATCCG 
    GGAAGTTCAA GAGAGTGTCT CCACCTTTAA GAGCTAACGC CGCCACNGTC 
    ATATGCNGGC AGCAGCCATC TCCGGCGTCG GATAAGTCCC AAGCCAGACA 
    CGTGTAGTCT TTTTAGGCTC TCGGATTTCA GACACCCATT TTCCACTCCG 
    ACAACGAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23371923 [Map]; Strand: w
      • AT1G63040.1 - [+] show detail - pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thal...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-2768-1 - 5-prime edge 
    GCTGGAGCGG CCGTGAAGGT AGGTGAAAAG AAGGAAGATA AAGTTTATGA 
    TACAGGCGGA ATCTTCAACT ATGGGGTTTG TGGATGAAGA AGAGCTGTTG 
    AACATGCCTG GTTTGCTAGC NGGATATGGC CAAAGGGATG ATGGTGGCTC 
    CACCGTGGAT GGGATCTCCA CCGTCAGATG ATTCGCCAGA GAATT

AT1G63040.1

Model type
Pseudogene
Curator Summary
a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thaliana) (Plant Cell 10 (8), 1391-1406 (1998)); blastp match of 38% identity and 3.9e-24 P-value to GP|18535580|gb|AAK57551.1||AY034473 putative transcriptional activator CBF1 {Lycopersicon esculentum}
Link
InterPro Scan - TAIR