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Mutant Lines
13-2810-1

13-2810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 26812428 [Map]; Strand: w
  - AT1G71080.1 - [+] show detail - RNA polymerase II transcription elongation factor
    Distance: -586; Region: promoter
  - AT1G71090.1 - [+] show detail - Auxin efflux carrier family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 13-2810-1 - 5-prime edge
```
TCTCTATCCA ACCATCTTCA CGACTGTGGT CTAATTGATT TGTTAGTGTT 
CTTCTATTTC CTGGTTCAGA TTCTTCACTG CTGTGTATAG TTCTTCTCAT 
TCAATTACTT GGGTTGTGGT TTAAATCACC AATTTGGTCA TCTTCTTGTG 
TTTTTTTCTA TCGTTGACTT CGAGCTTTAC ATAGTGAGAT CGAGATGTCA 
GGTTTCTCCA GTGGAAATGT TAATTCTAGG GTTGTGGATA TACTCAGTGG 
TGTTGTGCCT TTGTTGAAGC T
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 26812312 [Map]; Strand: w
- AT1G71080.1 - [+] show detail - RNA polymerase II transcription elongation factor
  Distance: -470; Region: promoter
- AT1G71090.1 - [+] show detail - Auxin efflux carrier family protein
  Distance: 0; Region: exon1 (5UTR)

GATAGAGATA AAGCCGATTA GAGAACAACA CCTGGAGCTA CACAATACAC 
ATGGAACTTG TCAATGAAGA AGAAGACAAG ATTGCGATGA CAGATGCATC 
ATCCACGCCA AATCTACTGA TTGCAATAAT TTTGTATCTT GAAGTTTCTT 
CTTGATTTGA AAATTTTGTA TTTATCACAT CGTGCGAAGA AGATAATCTG 
TGGTTGAACG ATACTGTCAA AGATTATCCA TTGGGCTAGC GACAACACGA 
GTCTAAAAAA GAAGCCCAAT TATAAGCCCA TTAATGCGTC AAAATATACA 
AACCAAACAC TAGCGGCTGA ATGATCGGTC ATTTCCGGTT TAATATTAAA 
TCAGAACAAG ACGACAAAAG GGAACGCTTG GCTTGAGATT TGATCAGTAA 
TCGCACGTGG GAATAAAATA GCTGCCGCAA ACCAAACAGA TCCACGTGGA 
ACCCAAAACC AGACATACTA ACTCGTGTCC GTACGTAATT GGTTAAGAAG 
ATTAAAAAGC ATGAATCGGC GGGTACCGGA TC

AT1G71080.1

Model type: Protein coding
Short Description: RNA polymerase II transcription elongation factor
Computational Description: RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G71090.1

Model type: Protein coding
Short Description: Auxin efflux carrier family protein
Computational Description: Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT5G01990.1); Has 749 Blast hits to 638 proteins in 173 species: Archae - 11; Bacteria - 75; Metazoa - 0; Fungi - 346; Plants - 230; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link: InterPro Scan - TAIR