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Mutant Lines
13-2826-1

13-2826-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030625 [Map]; Strand: w
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -490; Region: promoter
Flanking Genome Sequence: 13-2826-1 - 3-prime edge
```
TTCCCTATCC ATCGATTTAG GGTTTCCGAT TTCGTTTTCG AGCTTTTCTC 
GCTCTTCTCT CACTTTTTCT TTCCTCCTTT GGCTCTTTTC TCCTTCTTCA 
ATCTCTCTCC CATGACTCTA AAGTCTCCAA TTCCTGTTAG ATTCCGAAAT 
TATCATGATC TGGGTGCTTA ATCAGATCGA GATATCTATA TTTTGTGCTT 
GAATCGCCTA GGATTTTCTA GTGTTTACGC GTCTTGTCAT GGTGAGTACT 
CAACAACGCA CGGACGATGA CTCTTCTCAA CCGGTAAAAG CT
```
5 prime edge [+] show sequence
1. Chromosome: 2; Position: 11030686 [Map]; Strand: w
  - AT2G25850.4 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25850.3 - [+] show detail - poly(A) polymerase 2
    Distance: -59; Region: promoter
  - AT2G25850.1 - [+] show detail - poly(A) polymerase 2
    Distance: -59; Region: promoter
  - AT2G25850.2 - [+] show detail - poly(A) polymerase 2
    Distance: 0; Region: exon1 (5UTR)
  - AT2G25870.1 - [+] show detail - haloacid dehalogenase-like hydrolase family protein
    Distance: -429; Region: promoter
Flanking Genome Sequence: 13-2826-1 - 5-prime edge
```
GGTNATAAAC TAACAAAATC GGTTATACAG ATAACGGTCG GTACGGGATT 
TTCCCATCCT ACTTTCTCTC GACTGGAATT TTCAAAGGGA AGTCAAAGAA 
AGCGGAAAAT ATCATACGGA TTAAAATCAA TTTTGACTTG TTCAAAGAAG 
GGAGAGAAGG AGAAGCAAAG GACAATAGTT TTTATTGGTT AAATCGAATT
```

AT2G25850.1

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 814 Blast hits to 806 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 214; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.2

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.10); Has 815 Blast hits to 807 proteins in 221 species: Archae - 0; Bacteria - 15; Metazoa - 260; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.3

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.6); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25850.4

Model type: Protein coding
Short Description: poly(A) polymerase 2
Curator Summary: Encodes a poly(A) polymerase. Located in the nucleus.
Computational Description: poly(A) polymerase 2 (PAPS2); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nuclear poly(a) polymerase (TAIR:AT4G32850.9).
Link: InterPro Scan - TAIR

AT2G25870.1

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Link: InterPro Scan - TAIR