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13-2875-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12727856 [Map]; Strand: c
      • AT4G24670.1 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon5 (3UTR)
      • AT4G24670.2 - [+] show detail - tryptophan aminotransferase related 2
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-2875-1 - 5-prime edge 
    GTGATTATGA TCGATTGTCA TAACTTGCAA CAAGTGTTTT GCTCCATAAA 
    TATTATTGGA AATTTGAATA ATGTGAAGGA TCAATCAAAG ACCTATTCAT 
    CAAACCATCT CTGATGATAT GAATGAGCAA ACATTCATTC ACTACGACAC 
    AACCGAGAGT TTGTTCAAGC GTTGTCAGCA TTTTGGTCTG GAACTTTGTA 
    ATCTCGAAGG ATCAGATCCA ACATCTCATA GCTTTTTCAG TATTAAATTC 
    CAGCCTTAGG TAATCCTTCA GAGTCATATC AACATTTTTG CTACGGAAGG 
    ATCATTGTCG CTACCTTCCA TTTTACATTT GTGTCAGCTT TATTCACAGC 
    ACCGTTTTTT AGCCGCATCA ACTTTCTTTC TTTGTATAAT TCAGAAGAAT 
    GAAATCATCC AAAATCATTT ATATTTCATA ACAAAAATGT TTTAAAAAAG 
    TTGAACATAA AAAAAAAAAA AAAATTTCCA AANCCCCCCN TAACCTNTAA 
    AAAANCCNAA NNGGGNAAAG TTNCAAAAAA NNANNNTTNG GGNCCNCTTT 
    TNTNNNNNNN AAAANGTTAA NTTTTTNGGG GGGGGNNGGN AAAAAAANAN 
    TTNAANCCTT TAAAAAA

AT4G24670.1

Model type
Protein coding
Short Description
tryptophan aminotransferase related 2
Curator Summary
Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
Computational Description
tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24670.2

Model type
Protein coding
Short Description
tryptophan aminotransferase related 2
Curator Summary
Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
Computational Description
tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR